Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.642.1 and Xcc-8004.643.1 are separated by 126 nucleotides Xcc-8004.643.1 and Xcc-8004.644.1 are separated by 3 nucleotides Xcc-8004.644.1 and Xcc-8004.645.1 are separated by 79 nucleotides Xcc-8004.645.1 and Xcc-8004.646.1 are separated by 76 nucleotides
Xcc-8004.642.1: Xcc-8004.642.1 - FIG034602: Probable transmembrane protein, at 587,136 to 587,762
Xcc-8004.642.1
Xcc-8004.643.1: Xcc-8004.643.1 - FIG071884: Hypothetical protein, at 587,889 to 588,626
Xcc-8004.643.1
Xcc-8004.644.1: Xcc-8004.644.1 - Integral membrane protein CcmA involved in cell shape determination, at 588,630 to 589,082
Xcc-8004.644.1
Xcc-8004.645.1: Xcc-8004.645.1 - probable iron binding protein from the HesB_IscA_SufA family, at 589,162 to 589,548
Xcc-8004.645.1
Xcc-8004.646.1: Xcc-8004.646.1 - NADH pyrophosphatase (EC 3.6.1.22), at 589,625 to 590,524
Xcc-8004.646.1
Position (kb) 588
589
590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 587.698 kb on + strand, within Xcc-8004.642.1 at 587.698 kb on + strand, within Xcc-8004.642.1 at 587.698 kb on + strand, within Xcc-8004.642.1 at 587.698 kb on + strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.792 kb on + strand at 587.793 kb on - strand at 587.793 kb on - strand at 587.848 kb on + strand at 587.848 kb on + strand at 587.848 kb on + strand at 587.849 kb on - strand at 587.849 kb on - strand at 587.849 kb on - strand at 587.897 kb on + strand at 587.897 kb on + strand at 587.897 kb on + strand at 587.898 kb on - strand at 587.898 kb on - strand at 588.229 kb on + strand, within Xcc-8004.643.1 at 588.229 kb on + strand, within Xcc-8004.643.1 at 588.229 kb on + strand, within Xcc-8004.643.1 at 588.229 kb on + strand, within Xcc-8004.643.1 at 588.229 kb on + strand, within Xcc-8004.643.1 at 588.229 kb on + strand, within Xcc-8004.643.1 at 588.230 kb on - strand, within Xcc-8004.643.1 at 588.230 kb on - strand, within Xcc-8004.643.1 at 588.230 kb on - strand, within Xcc-8004.643.1 at 588.237 kb on + strand, within Xcc-8004.643.1 at 588.237 kb on + strand, within Xcc-8004.643.1 at 588.237 kb on + strand, within Xcc-8004.643.1 at 588.237 kb on + strand, within Xcc-8004.643.1 at 588.237 kb on + strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.474 kb on + strand, within Xcc-8004.643.1 at 588.475 kb on - strand, within Xcc-8004.643.1 at 588.475 kb on - strand, within Xcc-8004.643.1 at 588.475 kb on - strand, within Xcc-8004.643.1 at 588.487 kb on - strand, within Xcc-8004.643.1 at 588.624 kb on + strand at 588.624 kb on + strand at 588.624 kb on + strand at 588.624 kb on + strand at 588.624 kb on + strand at 588.624 kb on + strand at 588.624 kb on + strand at 588.625 kb on - strand at 588.625 kb on - strand at 588.625 kb on - strand at 588.625 kb on - strand at 588.625 kb on - strand at 588.625 kb on - strand at 588.625 kb on - strand at 588.675 kb on - strand at 588.675 kb on - strand at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.930 kb on + strand, within Xcc-8004.644.1 at 588.931 kb on - strand, within Xcc-8004.644.1 at 588.931 kb on - strand, within Xcc-8004.644.1 at 588.931 kb on - strand, within Xcc-8004.644.1 at 589.167 kb on + strand at 589.167 kb on + strand at 589.207 kb on + strand, within Xcc-8004.645.1 at 589.725 kb on + strand, within Xcc-8004.646.1 at 589.725 kb on + strand, within Xcc-8004.646.1 at 589.726 kb on - strand, within Xcc-8004.646.1 at 589.726 kb on - strand, within Xcc-8004.646.1 at 589.826 kb on - strand, within Xcc-8004.646.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 587,698 + Xcc-8004.642.1 0.90 +1.5 587,698 + Xcc-8004.642.1 0.90 +1.5 587,698 + Xcc-8004.642.1 0.90 +1.2 587,698 + Xcc-8004.642.1 0.90 +0.2 587,699 - Xcc-8004.642.1 0.90 -2.0 587,699 - Xcc-8004.642.1 0.90 -0.8 587,699 - Xcc-8004.642.1 0.90 -2.4 587,699 - Xcc-8004.642.1 0.90 -0.8 587,699 - Xcc-8004.642.1 0.90 +0.8 587,699 - Xcc-8004.642.1 0.90 -1.3 587,699 - Xcc-8004.642.1 0.90 -1.4 587,699 - Xcc-8004.642.1 0.90 -1.6 587,792 + +1.5 587,793 - -0.1 587,793 - +0.1 587,848 + +1.2 587,848 + -0.8 587,848 + +0.5 587,849 - +0.1 587,849 - +0.5 587,849 - +0.3 587,897 + -0.4 587,897 + +0.8 587,897 + +0.5 587,898 - +0.4 587,898 - -1.5 588,229 + Xcc-8004.643.1 0.46 +0.0 588,229 + Xcc-8004.643.1 0.46 -1.5 588,229 + Xcc-8004.643.1 0.46 +0.5 588,229 + Xcc-8004.643.1 0.46 +0.2 588,229 + Xcc-8004.643.1 0.46 -1.2 588,229 + Xcc-8004.643.1 0.46 +0.4 588,230 - Xcc-8004.643.1 0.46 +0.8 588,230 - Xcc-8004.643.1 0.46 +1.5 588,230 - Xcc-8004.643.1 0.46 -0.9 588,237 + Xcc-8004.643.1 0.47 -0.3 588,237 + Xcc-8004.643.1 0.47 +0.9 588,237 + Xcc-8004.643.1 0.47 +0.2 588,237 + Xcc-8004.643.1 0.47 -2.2 588,237 + Xcc-8004.643.1 0.47 -2.9 588,238 - Xcc-8004.643.1 0.47 -1.7 588,238 - Xcc-8004.643.1 0.47 +2.4 588,238 - Xcc-8004.643.1 0.47 -0.6 588,238 - Xcc-8004.643.1 0.47 -0.5 588,238 - Xcc-8004.643.1 0.47 -1.1 588,238 - Xcc-8004.643.1 0.47 -1.0 588,238 - Xcc-8004.643.1 0.47 -0.7 588,238 - Xcc-8004.643.1 0.47 -1.2 588,238 - Xcc-8004.643.1 0.47 -0.3 588,238 - Xcc-8004.643.1 0.47 -0.2 588,327 + Xcc-8004.643.1 0.59 +0.2 588,327 + Xcc-8004.643.1 0.59 +0.7 588,327 + Xcc-8004.643.1 0.59 +0.4 588,327 + Xcc-8004.643.1 0.59 -1.2 588,327 + Xcc-8004.643.1 0.59 -1.4 588,327 + Xcc-8004.643.1 0.59 +1.9 588,327 + Xcc-8004.643.1 0.59 -0.1 588,327 + Xcc-8004.643.1 0.59 +0.2 588,328 - Xcc-8004.643.1 0.59 -2.5 588,328 - Xcc-8004.643.1 0.59 -0.2 588,328 - Xcc-8004.643.1 0.59 -0.0 588,328 - Xcc-8004.643.1 0.59 +0.5 588,328 - Xcc-8004.643.1 0.59 -0.2 588,328 - Xcc-8004.643.1 0.59 -0.7 588,328 - Xcc-8004.643.1 0.59 +1.0 588,474 + Xcc-8004.643.1 0.79 -0.3 588,475 - Xcc-8004.643.1 0.79 -0.6 588,475 - Xcc-8004.643.1 0.79 -1.2 588,475 - Xcc-8004.643.1 0.79 +0.2 588,487 - Xcc-8004.643.1 0.81 -1.1 588,624 + +0.1 588,624 + +0.7 588,624 + -0.4 588,624 + +1.0 588,624 + -0.0 588,624 + -0.5 588,624 + +1.1 588,625 - +0.2 588,625 - +0.6 588,625 - -0.1 588,625 - -0.6 588,625 - +0.7 588,625 - +1.1 588,625 - -0.2 588,675 - -0.3 588,675 - -1.4 588,732 + Xcc-8004.644.1 0.23 -0.4 588,732 + Xcc-8004.644.1 0.23 -0.1 588,732 + Xcc-8004.644.1 0.23 +1.6 588,732 + Xcc-8004.644.1 0.23 +0.9 588,732 + Xcc-8004.644.1 0.23 -2.5 588,732 + Xcc-8004.644.1 0.23 -0.1 588,732 + Xcc-8004.644.1 0.23 -0.2 588,732 + Xcc-8004.644.1 0.23 -1.8 588,732 + Xcc-8004.644.1 0.23 -0.3 588,732 + Xcc-8004.644.1 0.23 -0.2 588,732 + Xcc-8004.644.1 0.23 +0.1 588,732 + Xcc-8004.644.1 0.23 +1.3 588,732 + Xcc-8004.644.1 0.23 -0.5 588,732 + Xcc-8004.644.1 0.23 +0.2 588,733 - Xcc-8004.644.1 0.23 -1.1 588,733 - Xcc-8004.644.1 0.23 -1.6 588,733 - Xcc-8004.644.1 0.23 -1.0 588,733 - Xcc-8004.644.1 0.23 -0.6 588,733 - Xcc-8004.644.1 0.23 -3.5 588,733 - Xcc-8004.644.1 0.23 +0.2 588,733 - Xcc-8004.644.1 0.23 -0.1 588,733 - Xcc-8004.644.1 0.23 -0.6 588,733 - Xcc-8004.644.1 0.23 -2.7 588,733 - Xcc-8004.644.1 0.23 -0.2 588,733 - Xcc-8004.644.1 0.23 +0.5 588,733 - Xcc-8004.644.1 0.23 +0.7 588,733 - Xcc-8004.644.1 0.23 -0.2 588,733 - Xcc-8004.644.1 0.23 +1.3 588,930 + Xcc-8004.644.1 0.66 +1.7 588,931 - Xcc-8004.644.1 0.66 -1.6 588,931 - Xcc-8004.644.1 0.66 +0.9 588,931 - Xcc-8004.644.1 0.66 +0.3 589,167 + -1.2 589,167 + -0.2 589,207 + Xcc-8004.645.1 0.12 -1.4 589,725 + Xcc-8004.646.1 0.11 +0.6 589,725 + Xcc-8004.646.1 0.11 -2.6 589,726 - Xcc-8004.646.1 0.11 -0.7 589,726 - Xcc-8004.646.1 0.11 -1.1 589,826 - Xcc-8004.646.1 0.22 -0.8
Or see this region's nucleotide sequence