Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.642.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.641.1 and Xcc-8004.642.1 are separated by 38 nucleotidesXcc-8004.642.1 and Xcc-8004.643.1 are separated by 126 nucleotidesXcc-8004.643.1 and Xcc-8004.644.1 are separated by 3 nucleotides Xcc-8004.641.1: Xcc-8004.641.1 - FIG035830: Two-component system regulatory protein, at 585,145 to 587,097 Xcc-8004.641.1 Xcc-8004.642.1: Xcc-8004.642.1 - FIG034602: Probable transmembrane protein, at 587,136 to 587,762 Xcc-8004.642.1 Xcc-8004.643.1: Xcc-8004.643.1 - FIG071884: Hypothetical protein, at 587,889 to 588,626 Xcc-8004.643.1 Xcc-8004.644.1: Xcc-8004.644.1 - Integral membrane protein CcmA involved in cell shape determination, at 588,630 to 589,082 Xcc-8004.644.1 Position (kb) 587 588Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 586.175 kb on + strand, within Xcc-8004.641.1at 586.229 kb on + strand, within Xcc-8004.641.1at 586.229 kb on + strand, within Xcc-8004.641.1at 586.238 kb on + strand, within Xcc-8004.641.1at 586.244 kb on + strand, within Xcc-8004.641.1at 586.245 kb on - strand, within Xcc-8004.641.1at 586.655 kb on + strand, within Xcc-8004.641.1at 586.655 kb on + strand, within Xcc-8004.641.1at 586.656 kb on - strand, within Xcc-8004.641.1at 586.656 kb on - strand, within Xcc-8004.641.1at 586.656 kb on - strand, within Xcc-8004.641.1at 586.781 kb on + strand, within Xcc-8004.641.1at 586.782 kb on - strand, within Xcc-8004.641.1at 587.009 kb on + strandat 587.009 kb on + strandat 587.010 kb on - strandat 587.010 kb on - strandat 587.046 kb on + strandat 587.047 kb on - strandat 587.047 kb on - strandat 587.047 kb on - strandat 587.047 kb on - strandat 587.101 kb on + strandat 587.101 kb on + strandat 587.101 kb on + strandat 587.101 kb on + strandat 587.101 kb on + strandat 587.102 kb on - strandat 587.102 kb on - strandat 587.102 kb on - strandat 587.102 kb on - strandat 587.102 kb on - strandat 587.102 kb on - strandat 587.123 kb on + strandat 587.124 kb on - strandat 587.124 kb on - strandat 587.124 kb on - strandat 587.157 kb on + strandat 587.158 kb on - strandat 587.214 kb on + strand, within Xcc-8004.642.1at 587.214 kb on + strand, within Xcc-8004.642.1at 587.214 kb on + strand, within Xcc-8004.642.1at 587.214 kb on + strand, within Xcc-8004.642.1at 587.214 kb on + strand, within Xcc-8004.642.1at 587.215 kb on - strand, within Xcc-8004.642.1at 587.215 kb on - strand, within Xcc-8004.642.1at 587.698 kb on + strand, within Xcc-8004.642.1at 587.698 kb on + strand, within Xcc-8004.642.1at 587.698 kb on + strand, within Xcc-8004.642.1at 587.698 kb on + strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.792 kb on + strandat 587.793 kb on - strandat 587.793 kb on - strandat 587.848 kb on + strandat 587.848 kb on + strandat 587.848 kb on + strandat 587.849 kb on - strandat 587.849 kb on - strandat 587.849 kb on - strandat 587.897 kb on + strandat 587.897 kb on + strandat 587.897 kb on + strandat 587.898 kb on - strandat 587.898 kb on - strandat 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.230 kb on - strand, within Xcc-8004.643.1at 588.230 kb on - strand, within Xcc-8004.643.1at 588.230 kb on - strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.474 kb on + strand, within Xcc-8004.643.1at 588.475 kb on - strand, within Xcc-8004.643.1at 588.475 kb on - strand, within Xcc-8004.643.1at 588.475 kb on - strand, within Xcc-8004.643.1at 588.487 kb on - strand, within Xcc-8004.643.1at 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.675 kb on - strandat 588.675 kb on - strandat 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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586,175 + Xcc-8004.641.1 0.53 -2.4
586,229 + Xcc-8004.641.1 0.56 +0.5
586,229 + Xcc-8004.641.1 0.56 -0.4
586,238 + Xcc-8004.641.1 0.56 +0.5
586,244 + Xcc-8004.641.1 0.56 +0.8
586,245 - Xcc-8004.641.1 0.56 -0.0
586,655 + Xcc-8004.641.1 0.77 -0.5
586,655 + Xcc-8004.641.1 0.77 +0.1
586,656 - Xcc-8004.641.1 0.77 +1.8
586,656 - Xcc-8004.641.1 0.77 +0.5
586,656 - Xcc-8004.641.1 0.77 -0.0
586,781 + Xcc-8004.641.1 0.84 -0.3
586,782 - Xcc-8004.641.1 0.84 +1.6
587,009 + -1.0
587,009 + -0.3
587,010 - -1.5
587,010 - +0.4
587,046 + -1.7
587,047 - +1.1
587,047 - -0.0
587,047 - -1.8
587,047 - +4.0
587,101 + -0.4
587,101 + +1.3
587,101 + +0.8
587,101 + +1.1
587,101 + +0.1
587,102 - -0.2
587,102 - -2.2
587,102 - -1.5
587,102 - +0.9
587,102 - +1.3
587,102 - +0.8
587,123 + +1.9
587,124 - +1.4
587,124 - -0.8
587,124 - -1.7
587,157 + +0.7
587,158 - -0.9
587,214 + Xcc-8004.642.1 0.12 -1.2
587,214 + Xcc-8004.642.1 0.12 +0.8
587,214 + Xcc-8004.642.1 0.12 +0.5
587,214 + Xcc-8004.642.1 0.12 +1.6
587,214 + Xcc-8004.642.1 0.12 -2.8
587,215 - Xcc-8004.642.1 0.13 -0.6
587,215 - Xcc-8004.642.1 0.13 -2.5
587,698 + Xcc-8004.642.1 0.90 +1.5
587,698 + Xcc-8004.642.1 0.90 +1.5
587,698 + Xcc-8004.642.1 0.90 +1.2
587,698 + Xcc-8004.642.1 0.90 +0.2
587,699 - Xcc-8004.642.1 0.90 -2.0
587,699 - Xcc-8004.642.1 0.90 -0.8
587,699 - Xcc-8004.642.1 0.90 -2.4
587,699 - Xcc-8004.642.1 0.90 -0.8
587,699 - Xcc-8004.642.1 0.90 +0.8
587,699 - Xcc-8004.642.1 0.90 -1.3
587,699 - Xcc-8004.642.1 0.90 -1.4
587,699 - Xcc-8004.642.1 0.90 -1.6
587,792 + +1.5
587,793 - -0.1
587,793 - +0.1
587,848 + +1.2
587,848 + -0.8
587,848 + +0.5
587,849 - +0.1
587,849 - +0.5
587,849 - +0.3
587,897 + -0.4
587,897 + +0.8
587,897 + +0.5
587,898 - +0.4
587,898 - -1.5
588,229 + Xcc-8004.643.1 0.46 +0.0
588,229 + Xcc-8004.643.1 0.46 -1.5
588,229 + Xcc-8004.643.1 0.46 +0.5
588,229 + Xcc-8004.643.1 0.46 +0.2
588,229 + Xcc-8004.643.1 0.46 -1.2
588,229 + Xcc-8004.643.1 0.46 +0.4
588,230 - Xcc-8004.643.1 0.46 +0.8
588,230 - Xcc-8004.643.1 0.46 +1.5
588,230 - Xcc-8004.643.1 0.46 -0.9
588,237 + Xcc-8004.643.1 0.47 -0.3
588,237 + Xcc-8004.643.1 0.47 +0.9
588,237 + Xcc-8004.643.1 0.47 +0.2
588,237 + Xcc-8004.643.1 0.47 -2.2
588,237 + Xcc-8004.643.1 0.47 -2.9
588,238 - Xcc-8004.643.1 0.47 -1.7
588,238 - Xcc-8004.643.1 0.47 +2.4
588,238 - Xcc-8004.643.1 0.47 -0.6
588,238 - Xcc-8004.643.1 0.47 -0.5
588,238 - Xcc-8004.643.1 0.47 -1.1
588,238 - Xcc-8004.643.1 0.47 -1.0
588,238 - Xcc-8004.643.1 0.47 -0.7
588,238 - Xcc-8004.643.1 0.47 -1.2
588,238 - Xcc-8004.643.1 0.47 -0.3
588,238 - Xcc-8004.643.1 0.47 -0.2
588,327 + Xcc-8004.643.1 0.59 +0.2
588,327 + Xcc-8004.643.1 0.59 +0.7
588,327 + Xcc-8004.643.1 0.59 +0.4
588,327 + Xcc-8004.643.1 0.59 -1.2
588,327 + Xcc-8004.643.1 0.59 -1.4
588,327 + Xcc-8004.643.1 0.59 +1.9
588,327 + Xcc-8004.643.1 0.59 -0.1
588,327 + Xcc-8004.643.1 0.59 +0.2
588,328 - Xcc-8004.643.1 0.59 -2.5
588,328 - Xcc-8004.643.1 0.59 -0.2
588,328 - Xcc-8004.643.1 0.59 -0.0
588,328 - Xcc-8004.643.1 0.59 +0.5
588,328 - Xcc-8004.643.1 0.59 -0.2
588,328 - Xcc-8004.643.1 0.59 -0.7
588,328 - Xcc-8004.643.1 0.59 +1.0
588,474 + Xcc-8004.643.1 0.79 -0.3
588,475 - Xcc-8004.643.1 0.79 -0.6
588,475 - Xcc-8004.643.1 0.79 -1.2
588,475 - Xcc-8004.643.1 0.79 +0.2
588,487 - Xcc-8004.643.1 0.81 -1.1
588,624 + +0.1
588,624 + +0.7
588,624 + -0.4
588,624 + +1.0
588,624 + -0.0
588,624 + -0.5
588,624 + +1.1
588,625 - +0.2
588,625 - +0.6
588,625 - -0.1
588,625 - -0.6
588,625 - +0.7
588,625 - +1.1
588,625 - -0.2
588,675 - -0.3
588,675 - -1.4
588,732 + Xcc-8004.644.1 0.23 -0.4
588,732 + Xcc-8004.644.1 0.23 -0.1
588,732 + Xcc-8004.644.1 0.23 +1.6
588,732 + Xcc-8004.644.1 0.23 +0.9
588,732 + Xcc-8004.644.1 0.23 -2.5
588,732 + Xcc-8004.644.1 0.23 -0.1
588,732 + Xcc-8004.644.1 0.23 -0.2
588,732 + Xcc-8004.644.1 0.23 -1.8
588,732 + Xcc-8004.644.1 0.23 -0.3
588,732 + Xcc-8004.644.1 0.23 -0.2
588,732 + Xcc-8004.644.1 0.23 +0.1
588,732 + Xcc-8004.644.1 0.23 +1.3
588,732 + Xcc-8004.644.1 0.23 -0.5
588,732 + Xcc-8004.644.1 0.23 +0.2
588,733 - Xcc-8004.644.1 0.23 -1.1
588,733 - Xcc-8004.644.1 0.23 -1.6
588,733 - Xcc-8004.644.1 0.23 -1.0
588,733 - Xcc-8004.644.1 0.23 -0.6
588,733 - Xcc-8004.644.1 0.23 -3.5
588,733 - Xcc-8004.644.1 0.23 +0.2
588,733 - Xcc-8004.644.1 0.23 -0.1
588,733 - Xcc-8004.644.1 0.23 -0.6
588,733 - Xcc-8004.644.1 0.23 -2.7
588,733 - Xcc-8004.644.1 0.23 -0.2
588,733 - Xcc-8004.644.1 0.23 +0.5
588,733 - Xcc-8004.644.1 0.23 +0.7
588,733 - Xcc-8004.644.1 0.23 -0.2
588,733 - Xcc-8004.644.1 0.23 +1.3

Or see this region's nucleotide sequence