Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4904.1 and Xcc-8004.4905.1 are separated by 57 nucleotides Xcc-8004.4905.1 and Xcc-8004.4906.1 are separated by 269 nucleotides Xcc-8004.4906.1 and Xcc-8004.4907.1 overlap by 8 nucleotides
Xcc-8004.4904.1: Xcc-8004.4904.1 - O-antigen acetylase, at 4,662,117 to 4,663,241
Xcc-8004.4904.1
Xcc-8004.4905.1: Xcc-8004.4905.1 - FIG01211209: hypothetical protein, at 4,663,299 to 4,663,649
Xcc-8004.4905.1
Xcc-8004.4906.1: Xcc-8004.4906.1 - Glucosyltransferase, at 4,663,919 to 4,665,253
Xcc-8004.4906.1
Xcc-8004.4907.1: Xcc-8004.4907.1 - Enterobactin synthetase component F (EC 2.7.7.-), at 4,665,246 to 4,669,226
Xcc-8004.4907.1
Position (kb) 4663
4664
4665
4666 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4662.967 kb on + strand, within Xcc-8004.4904.1 at 4662.967 kb on + strand, within Xcc-8004.4904.1 at 4663.021 kb on + strand, within Xcc-8004.4904.1 at 4663.021 kb on + strand, within Xcc-8004.4904.1 at 4663.021 kb on + strand, within Xcc-8004.4904.1 at 4663.022 kb on - strand, within Xcc-8004.4904.1 at 4663.022 kb on - strand, within Xcc-8004.4904.1 at 4663.022 kb on - strand, within Xcc-8004.4904.1 at 4663.315 kb on + strand at 4663.315 kb on + strand at 4663.315 kb on + strand at 4663.316 kb on - strand at 4663.316 kb on - strand at 4663.316 kb on - strand at 4663.316 kb on - strand at 4663.316 kb on - strand at 4663.344 kb on - strand, within Xcc-8004.4905.1 at 4663.618 kb on - strand at 4663.618 kb on - strand at 4663.701 kb on + strand at 4663.701 kb on + strand at 4663.701 kb on + strand at 4663.721 kb on + strand at 4663.721 kb on + strand at 4663.745 kb on + strand at 4663.746 kb on - strand at 4663.746 kb on - strand at 4663.805 kb on + strand at 4663.806 kb on - strand at 4663.807 kb on + strand at 4663.807 kb on + strand at 4663.808 kb on - strand at 4663.808 kb on - strand at 4664.125 kb on + strand, within Xcc-8004.4906.1 at 4664.449 kb on + strand, within Xcc-8004.4906.1 at 4664.475 kb on + strand, within Xcc-8004.4906.1 at 4664.475 kb on + strand, within Xcc-8004.4906.1 at 4664.475 kb on + strand, within Xcc-8004.4906.1 at 4664.476 kb on - strand, within Xcc-8004.4906.1 at 4664.476 kb on - strand, within Xcc-8004.4906.1 at 4664.476 kb on - strand, within Xcc-8004.4906.1 at 4664.476 kb on - strand, within Xcc-8004.4906.1 at 4664.613 kb on + strand, within Xcc-8004.4906.1 at 4664.614 kb on - strand, within Xcc-8004.4906.1 at 4664.619 kb on + strand, within Xcc-8004.4906.1 at 4664.620 kb on - strand, within Xcc-8004.4906.1 at 4664.620 kb on - strand, within Xcc-8004.4906.1 at 4664.620 kb on - strand, within Xcc-8004.4906.1 at 4664.620 kb on - strand, within Xcc-8004.4906.1 at 4664.620 kb on - strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.872 kb on + strand, within Xcc-8004.4906.1 at 4664.872 kb on + strand, within Xcc-8004.4906.1 at 4665.132 kb on - strand at 4665.132 kb on - strand at 4665.253 kb on + strand at 4665.381 kb on - strand at 4665.412 kb on + strand at 4665.412 kb on + strand at 4665.412 kb on + strand at 4665.413 kb on - strand at 4665.413 kb on - strand at 4665.413 kb on - strand at 4665.413 kb on - strand at 4665.527 kb on - strand at 4665.992 kb on - strand, within Xcc-8004.4907.1 at 4666.033 kb on + strand, within Xcc-8004.4907.1 at 4666.033 kb on + strand, within Xcc-8004.4907.1 at 4666.033 kb on + strand, within Xcc-8004.4907.1 at 4666.034 kb on - strand, within Xcc-8004.4907.1 at 4666.080 kb on - strand, within Xcc-8004.4907.1 at 4666.143 kb on - strand, within Xcc-8004.4907.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,662,967 + Xcc-8004.4904.1 0.76 +0.5 4,662,967 + Xcc-8004.4904.1 0.76 -0.6 4,663,021 + Xcc-8004.4904.1 0.80 -0.3 4,663,021 + Xcc-8004.4904.1 0.80 -1.3 4,663,021 + Xcc-8004.4904.1 0.80 -0.4 4,663,022 - Xcc-8004.4904.1 0.80 +1.6 4,663,022 - Xcc-8004.4904.1 0.80 +0.4 4,663,022 - Xcc-8004.4904.1 0.80 +0.1 4,663,315 + -0.8 4,663,315 + -1.4 4,663,315 + -1.9 4,663,316 - +0.3 4,663,316 - -0.8 4,663,316 - +2.0 4,663,316 - -0.3 4,663,316 - +1.0 4,663,344 - Xcc-8004.4905.1 0.13 +1.3 4,663,618 - -1.4 4,663,618 - -0.6 4,663,701 + +0.7 4,663,701 + -1.3 4,663,701 + -0.2 4,663,721 + -0.2 4,663,721 + +0.0 4,663,745 + +0.3 4,663,746 - +2.5 4,663,746 - +0.2 4,663,805 + +0.1 4,663,806 - +0.1 4,663,807 + -0.5 4,663,807 + -0.5 4,663,808 - -0.5 4,663,808 - -1.4 4,664,125 + Xcc-8004.4906.1 0.15 +0.7 4,664,449 + Xcc-8004.4906.1 0.40 -0.5 4,664,475 + Xcc-8004.4906.1 0.42 +0.4 4,664,475 + Xcc-8004.4906.1 0.42 +0.3 4,664,475 + Xcc-8004.4906.1 0.42 +0.3 4,664,476 - Xcc-8004.4906.1 0.42 -1.5 4,664,476 - Xcc-8004.4906.1 0.42 -0.3 4,664,476 - Xcc-8004.4906.1 0.42 -0.0 4,664,476 - Xcc-8004.4906.1 0.42 -0.3 4,664,613 + Xcc-8004.4906.1 0.52 +0.3 4,664,614 - Xcc-8004.4906.1 0.52 +0.1 4,664,619 + Xcc-8004.4906.1 0.52 -0.2 4,664,620 - Xcc-8004.4906.1 0.53 -1.0 4,664,620 - Xcc-8004.4906.1 0.53 +0.4 4,664,620 - Xcc-8004.4906.1 0.53 -0.6 4,664,620 - Xcc-8004.4906.1 0.53 -1.0 4,664,620 - Xcc-8004.4906.1 0.53 -1.6 4,664,621 + Xcc-8004.4906.1 0.53 -0.3 4,664,621 + Xcc-8004.4906.1 0.53 -1.4 4,664,621 + Xcc-8004.4906.1 0.53 -0.2 4,664,621 + Xcc-8004.4906.1 0.53 +2.6 4,664,621 + Xcc-8004.4906.1 0.53 -0.3 4,664,621 + Xcc-8004.4906.1 0.53 -1.6 4,664,621 + Xcc-8004.4906.1 0.53 +0.3 4,664,621 + Xcc-8004.4906.1 0.53 +0.6 4,664,621 + Xcc-8004.4906.1 0.53 -1.0 4,664,621 + Xcc-8004.4906.1 0.53 -0.1 4,664,621 + Xcc-8004.4906.1 0.53 -0.7 4,664,621 + Xcc-8004.4906.1 0.53 -1.3 4,664,621 + Xcc-8004.4906.1 0.53 -1.9 4,664,621 + Xcc-8004.4906.1 0.53 -0.0 4,664,622 - Xcc-8004.4906.1 0.53 -0.3 4,664,622 - Xcc-8004.4906.1 0.53 +1.1 4,664,622 - Xcc-8004.4906.1 0.53 +1.1 4,664,622 - Xcc-8004.4906.1 0.53 -1.6 4,664,622 - Xcc-8004.4906.1 0.53 +0.7 4,664,622 - Xcc-8004.4906.1 0.53 -2.2 4,664,622 - Xcc-8004.4906.1 0.53 +0.4 4,664,622 - Xcc-8004.4906.1 0.53 -0.9 4,664,622 - Xcc-8004.4906.1 0.53 -1.7 4,664,622 - Xcc-8004.4906.1 0.53 -1.0 4,664,622 - Xcc-8004.4906.1 0.53 +0.2 4,664,872 + Xcc-8004.4906.1 0.71 +0.5 4,664,872 + Xcc-8004.4906.1 0.71 -0.7 4,665,132 - +1.3 4,665,132 - -1.7 4,665,253 + -1.1 4,665,381 - +0.6 4,665,412 + +1.3 4,665,412 + +0.8 4,665,412 + -0.0 4,665,413 - +0.2 4,665,413 - -0.6 4,665,413 - -2.2 4,665,413 - -0.0 4,665,527 - +0.5 4,665,992 - Xcc-8004.4907.1 0.19 -0.3 4,666,033 + Xcc-8004.4907.1 0.20 +0.5 4,666,033 + Xcc-8004.4907.1 0.20 +1.0 4,666,033 + Xcc-8004.4907.1 0.20 -1.9 4,666,034 - Xcc-8004.4907.1 0.20 +0.3 4,666,080 - Xcc-8004.4907.1 0.21 -0.0 4,666,143 - Xcc-8004.4907.1 0.23 +0.2
Or see this region's nucleotide sequence