Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.481.1 and Xcc-8004.482.1 are separated by 27 nucleotides Xcc-8004.482.1 and Xcc-8004.483.1 are separated by 485 nucleotides Xcc-8004.483.1 and Xcc-8004.484.1 are separated by 15 nucleotides
Xcc-8004.481.1: Xcc-8004.481.1 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 444,035 to 444,817
Xcc-8004.481.1
Xcc-8004.482.1: Xcc-8004.482.1 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 444,845 to 445,249
Xcc-8004.482.1
Xcc-8004.483.1: Xcc-8004.483.1 - Hydrolase, at 445,735 to 446,661
Xcc-8004.483.1
Xcc-8004.484.1: Xcc-8004.484.1 - Pca regulon regulatory protein PcaR, at 446,677 to 447,537
Xcc-8004.484.1
Position (kb) 445
446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 445.134 kb on + strand, within Xcc-8004.482.1 at 445.134 kb on + strand, within Xcc-8004.482.1 at 445.134 kb on + strand, within Xcc-8004.482.1 at 445.134 kb on + strand, within Xcc-8004.482.1 at 445.154 kb on + strand, within Xcc-8004.482.1 at 445.155 kb on - strand, within Xcc-8004.482.1 at 445.155 kb on - strand, within Xcc-8004.482.1 at 445.300 kb on - strand at 445.497 kb on + strand at 445.686 kb on + strand at 445.687 kb on - strand at 445.742 kb on + strand at 445.742 kb on + strand at 445.742 kb on + strand at 445.742 kb on + strand at 445.742 kb on + strand at 445.743 kb on - strand at 445.743 kb on - strand at 445.743 kb on - strand at 445.743 kb on - strand at 445.743 kb on - strand at 445.743 kb on - strand at 445.743 kb on - strand at 445.776 kb on + strand at 445.776 kb on + strand at 445.776 kb on + strand at 445.776 kb on + strand at 445.777 kb on - strand at 445.777 kb on - strand at 446.017 kb on + strand, within Xcc-8004.483.1 at 446.017 kb on + strand, within Xcc-8004.483.1 at 446.017 kb on + strand, within Xcc-8004.483.1 at 446.018 kb on - strand, within Xcc-8004.483.1 at 446.164 kb on + strand, within Xcc-8004.483.1 at 446.165 kb on - strand, within Xcc-8004.483.1 at 446.236 kb on + strand, within Xcc-8004.483.1 at 446.237 kb on - strand, within Xcc-8004.483.1 at 446.237 kb on - strand, within Xcc-8004.483.1 at 446.237 kb on - strand, within Xcc-8004.483.1 at 446.237 kb on - strand, within Xcc-8004.483.1 at 446.366 kb on + strand, within Xcc-8004.483.1 at 446.377 kb on + strand, within Xcc-8004.483.1 at 446.377 kb on + strand, within Xcc-8004.483.1 at 446.377 kb on + strand, within Xcc-8004.483.1 at 446.377 kb on + strand, within Xcc-8004.483.1 at 446.377 kb on + strand, within Xcc-8004.483.1 at 446.377 kb on + strand, within Xcc-8004.483.1 at 446.378 kb on - strand, within Xcc-8004.483.1 at 446.378 kb on - strand, within Xcc-8004.483.1 at 446.378 kb on - strand, within Xcc-8004.483.1 at 446.378 kb on - strand, within Xcc-8004.483.1 at 446.966 kb on + strand, within Xcc-8004.484.1 at 446.966 kb on + strand, within Xcc-8004.484.1 at 446.967 kb on - strand, within Xcc-8004.484.1 at 446.967 kb on - strand, within Xcc-8004.484.1 at 446.967 kb on - strand, within Xcc-8004.484.1 at 447.095 kb on + strand, within Xcc-8004.484.1 at 447.095 kb on + strand, within Xcc-8004.484.1 at 447.095 kb on + strand, within Xcc-8004.484.1 at 447.096 kb on - strand, within Xcc-8004.484.1 at 447.096 kb on - strand, within Xcc-8004.484.1 at 447.096 kb on - strand, within Xcc-8004.484.1 at 447.096 kb on - strand, within Xcc-8004.484.1 at 447.096 kb on - strand, within Xcc-8004.484.1 at 447.096 kb on - strand, within Xcc-8004.484.1 at 447.206 kb on + strand, within Xcc-8004.484.1 at 447.206 kb on + strand, within Xcc-8004.484.1 at 447.206 kb on + strand, within Xcc-8004.484.1 at 447.206 kb on + strand, within Xcc-8004.484.1 at 447.206 kb on + strand, within Xcc-8004.484.1 at 447.207 kb on - strand, within Xcc-8004.484.1 at 447.207 kb on - strand, within Xcc-8004.484.1 at 447.207 kb on - strand, within Xcc-8004.484.1 at 447.207 kb on - strand, within Xcc-8004.484.1 at 447.207 kb on - strand, within Xcc-8004.484.1 at 447.245 kb on + strand, within Xcc-8004.484.1 at 447.246 kb on - strand, within Xcc-8004.484.1 at 447.269 kb on + strand, within Xcc-8004.484.1 at 447.269 kb on + strand, within Xcc-8004.484.1 at 447.269 kb on + strand, within Xcc-8004.484.1 at 447.269 kb on + strand, within Xcc-8004.484.1 at 447.270 kb on - strand, within Xcc-8004.484.1 at 447.270 kb on - strand, within Xcc-8004.484.1 at 447.270 kb on - strand, within Xcc-8004.484.1 at 447.270 kb on - strand, within Xcc-8004.484.1 at 447.270 kb on - strand, within Xcc-8004.484.1 at 447.270 kb on - strand, within Xcc-8004.484.1 at 447.270 kb on - strand, within Xcc-8004.484.1 at 447.569 kb on + strand at 447.569 kb on + strand at 447.570 kb on - strand at 447.648 kb on - strand at 447.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 445,134 + Xcc-8004.482.1 0.71 +1.7 445,134 + Xcc-8004.482.1 0.71 -0.1 445,134 + Xcc-8004.482.1 0.71 +0.6 445,134 + Xcc-8004.482.1 0.71 -0.5 445,154 + Xcc-8004.482.1 0.76 -0.2 445,155 - Xcc-8004.482.1 0.77 -2.9 445,155 - Xcc-8004.482.1 0.77 -3.0 445,300 - -0.0 445,497 + +0.1 445,686 + -0.2 445,687 - -0.1 445,742 + -0.4 445,742 + -1.2 445,742 + -3.1 445,742 + +0.6 445,742 + -0.4 445,743 - +2.3 445,743 - +2.7 445,743 - +0.0 445,743 - -1.7 445,743 - +0.3 445,743 - +1.0 445,743 - +1.4 445,776 + +0.9 445,776 + -1.6 445,776 + -0.1 445,776 + -0.8 445,777 - -0.4 445,777 - -0.2 446,017 + Xcc-8004.483.1 0.30 +0.6 446,017 + Xcc-8004.483.1 0.30 -0.6 446,017 + Xcc-8004.483.1 0.30 -2.2 446,018 - Xcc-8004.483.1 0.31 +2.3 446,164 + Xcc-8004.483.1 0.46 +0.5 446,165 - Xcc-8004.483.1 0.46 -0.5 446,236 + Xcc-8004.483.1 0.54 -0.5 446,237 - Xcc-8004.483.1 0.54 -0.2 446,237 - Xcc-8004.483.1 0.54 +0.9 446,237 - Xcc-8004.483.1 0.54 +1.4 446,237 - Xcc-8004.483.1 0.54 -0.8 446,366 + Xcc-8004.483.1 0.68 +0.8 446,377 + Xcc-8004.483.1 0.69 +0.1 446,377 + Xcc-8004.483.1 0.69 -0.8 446,377 + Xcc-8004.483.1 0.69 +0.6 446,377 + Xcc-8004.483.1 0.69 +0.0 446,377 + Xcc-8004.483.1 0.69 -1.0 446,377 + Xcc-8004.483.1 0.69 -2.9 446,378 - Xcc-8004.483.1 0.69 -1.0 446,378 - Xcc-8004.483.1 0.69 +2.0 446,378 - Xcc-8004.483.1 0.69 -0.0 446,378 - Xcc-8004.483.1 0.69 +1.4 446,966 + Xcc-8004.484.1 0.34 -0.0 446,966 + Xcc-8004.484.1 0.34 +1.1 446,967 - Xcc-8004.484.1 0.34 +0.8 446,967 - Xcc-8004.484.1 0.34 +0.7 446,967 - Xcc-8004.484.1 0.34 +1.5 447,095 + Xcc-8004.484.1 0.49 +1.2 447,095 + Xcc-8004.484.1 0.49 -0.2 447,095 + Xcc-8004.484.1 0.49 +0.8 447,096 - Xcc-8004.484.1 0.49 -1.1 447,096 - Xcc-8004.484.1 0.49 +0.7 447,096 - Xcc-8004.484.1 0.49 +1.0 447,096 - Xcc-8004.484.1 0.49 +0.8 447,096 - Xcc-8004.484.1 0.49 -1.8 447,096 - Xcc-8004.484.1 0.49 -0.0 447,206 + Xcc-8004.484.1 0.61 -0.1 447,206 + Xcc-8004.484.1 0.61 +1.6 447,206 + Xcc-8004.484.1 0.61 -0.4 447,206 + Xcc-8004.484.1 0.61 +0.8 447,206 + Xcc-8004.484.1 0.61 -0.1 447,207 - Xcc-8004.484.1 0.62 +1.0 447,207 - Xcc-8004.484.1 0.62 -0.1 447,207 - Xcc-8004.484.1 0.62 +0.2 447,207 - Xcc-8004.484.1 0.62 +0.0 447,207 - Xcc-8004.484.1 0.62 +2.3 447,245 + Xcc-8004.484.1 0.66 +0.7 447,246 - Xcc-8004.484.1 0.66 +1.2 447,269 + Xcc-8004.484.1 0.69 +0.4 447,269 + Xcc-8004.484.1 0.69 +0.3 447,269 + Xcc-8004.484.1 0.69 +0.4 447,269 + Xcc-8004.484.1 0.69 -0.4 447,270 - Xcc-8004.484.1 0.69 -0.4 447,270 - Xcc-8004.484.1 0.69 +1.2 447,270 - Xcc-8004.484.1 0.69 +0.0 447,270 - Xcc-8004.484.1 0.69 -1.8 447,270 - Xcc-8004.484.1 0.69 -0.5 447,270 - Xcc-8004.484.1 0.69 +0.2 447,270 - Xcc-8004.484.1 0.69 +0.3 447,569 + -0.1 447,569 + +2.4 447,570 - -0.4 447,648 - -0.5 447,648 - -0.4
Or see this region's nucleotide sequence