Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4756.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4754.1 and Xcc-8004.4755.1 overlap by 4 nucleotidesXcc-8004.4755.1 and Xcc-8004.4756.1 are separated by 29 nucleotidesXcc-8004.4756.1 and Xcc-8004.4757.1 are separated by 50 nucleotidesXcc-8004.4757.1 and Xcc-8004.4758.1 are separated by 104 nucleotides Xcc-8004.4754.1: Xcc-8004.4754.1 - FIG01211156: hypothetical protein, at 4,523,717 to 4,524,457 Xcc-8004.4754.1 Xcc-8004.4755.1: Xcc-8004.4755.1 - FIG01210453: hypothetical protein, at 4,524,454 to 4,525,098 Xcc-8004.4755.1 Xcc-8004.4756.1: Xcc-8004.4756.1 - FIG01211576: hypothetical protein, at 4,525,128 to 4,526,486 Xcc-8004.4756.1 Xcc-8004.4757.1: Xcc-8004.4757.1 - Short-chain dehydrogenase/reductase SDR, at 4,526,537 to 4,527,313 Xcc-8004.4757.1 Xcc-8004.4758.1: Xcc-8004.4758.1 - FIG01211401: hypothetical protein, at 4,527,418 to 4,527,633 Xcc-8004.4758.1 Position (kb) 4525 4526 4527Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4524.218 kb on + strand, within Xcc-8004.4754.1at 4524.218 kb on + strand, within Xcc-8004.4754.1at 4524.218 kb on + strand, within Xcc-8004.4754.1at 4524.246 kb on - strand, within Xcc-8004.4754.1at 4524.269 kb on + strand, within Xcc-8004.4754.1at 4524.365 kb on + strand, within Xcc-8004.4754.1at 4524.365 kb on + strand, within Xcc-8004.4754.1at 4524.365 kb on + strand, within Xcc-8004.4754.1at 4524.366 kb on - strand, within Xcc-8004.4754.1at 4524.366 kb on - strand, within Xcc-8004.4754.1at 4524.453 kb on + strandat 4524.453 kb on + strandat 4524.453 kb on + strandat 4524.453 kb on + strandat 4524.454 kb on - strandat 4524.454 kb on - strandat 4524.454 kb on - strandat 4524.520 kb on + strand, within Xcc-8004.4755.1at 4524.520 kb on + strand, within Xcc-8004.4755.1at 4524.520 kb on + strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.698 kb on + strand, within Xcc-8004.4755.1at 4524.761 kb on + strand, within Xcc-8004.4755.1at 4524.761 kb on + strand, within Xcc-8004.4755.1at 4524.761 kb on + strand, within Xcc-8004.4755.1at 4524.762 kb on - strand, within Xcc-8004.4755.1at 4524.808 kb on + strand, within Xcc-8004.4755.1at 4524.808 kb on + strand, within Xcc-8004.4755.1at 4524.809 kb on - strand, within Xcc-8004.4755.1at 4524.809 kb on - strand, within Xcc-8004.4755.1at 4524.809 kb on - strand, within Xcc-8004.4755.1at 4525.037 kb on - strandat 4525.130 kb on - strandat 4525.130 kb on - strandat 4525.178 kb on - strandat 4525.178 kb on - strandat 4525.499 kb on - strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.510 kb on + strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.511 kb on - strand, within Xcc-8004.4756.1at 4525.522 kb on + strand, within Xcc-8004.4756.1at 4525.522 kb on + strand, within Xcc-8004.4756.1at 4525.522 kb on + strand, within Xcc-8004.4756.1at 4525.522 kb on + strand, within Xcc-8004.4756.1at 4525.522 kb on + strand, within Xcc-8004.4756.1at 4525.522 kb on + strand, within Xcc-8004.4756.1at 4525.523 kb on - strand, within Xcc-8004.4756.1at 4525.822 kb on + strand, within Xcc-8004.4756.1at 4525.822 kb on + strand, within Xcc-8004.4756.1at 4525.822 kb on + strand, within Xcc-8004.4756.1at 4525.822 kb on + strand, within Xcc-8004.4756.1at 4525.822 kb on + strand, within Xcc-8004.4756.1at 4525.822 kb on + strand, within Xcc-8004.4756.1at 4525.823 kb on - strand, within Xcc-8004.4756.1at 4525.823 kb on - strand, within Xcc-8004.4756.1at 4525.823 kb on - strand, within Xcc-8004.4756.1at 4525.823 kb on - strand, within Xcc-8004.4756.1at 4525.823 kb on - strand, within Xcc-8004.4756.1at 4525.823 kb on - strand, within Xcc-8004.4756.1at 4525.999 kb on + strand, within Xcc-8004.4756.1at 4525.999 kb on + strand, within Xcc-8004.4756.1at 4526.000 kb on - strand, within Xcc-8004.4756.1at 4526.000 kb on - strand, within Xcc-8004.4756.1at 4526.000 kb on - strand, within Xcc-8004.4756.1at 4526.047 kb on + strand, within Xcc-8004.4756.1at 4526.047 kb on + strand, within Xcc-8004.4756.1at 4526.047 kb on + strand, within Xcc-8004.4756.1at 4526.048 kb on - strand, within Xcc-8004.4756.1at 4526.048 kb on - strand, within Xcc-8004.4756.1at 4526.048 kb on - strand, within Xcc-8004.4756.1at 4526.048 kb on - strand, within Xcc-8004.4756.1at 4526.048 kb on - strand, within Xcc-8004.4756.1at 4526.345 kb on + strand, within Xcc-8004.4756.1at 4526.345 kb on + strand, within Xcc-8004.4756.1at 4526.345 kb on + strand, within Xcc-8004.4756.1at 4526.345 kb on + strand, within Xcc-8004.4756.1at 4526.345 kb on + strand, within Xcc-8004.4756.1at 4526.345 kb on + strand, within Xcc-8004.4756.1at 4526.346 kb on - strand, within Xcc-8004.4756.1at 4526.346 kb on - strand, within Xcc-8004.4756.1at 4526.347 kb on + strand, within Xcc-8004.4756.1at 4526.348 kb on - strand, within Xcc-8004.4756.1at 4526.348 kb on - strand, within Xcc-8004.4756.1at 4526.386 kb on + strandat 4526.538 kb on + strandat 4526.538 kb on + strandat 4527.385 kb on + strandat 4527.385 kb on + strandat 4527.385 kb on + strandat 4527.386 kb on - strandat 4527.438 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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4,524,218 + Xcc-8004.4754.1 0.68 -1.9
4,524,218 + Xcc-8004.4754.1 0.68 +0.3
4,524,218 + Xcc-8004.4754.1 0.68 -0.7
4,524,246 - Xcc-8004.4754.1 0.71 +0.2
4,524,269 + Xcc-8004.4754.1 0.74 +1.2
4,524,365 + Xcc-8004.4754.1 0.87 -0.2
4,524,365 + Xcc-8004.4754.1 0.87 +0.5
4,524,365 + Xcc-8004.4754.1 0.87 +0.0
4,524,366 - Xcc-8004.4754.1 0.88 -0.0
4,524,366 - Xcc-8004.4754.1 0.88 -0.8
4,524,453 + +0.3
4,524,453 + -0.5
4,524,453 + +0.2
4,524,453 + +0.1
4,524,454 - +1.3
4,524,454 - -0.8
4,524,454 - +0.3
4,524,520 + Xcc-8004.4755.1 0.10 -0.9
4,524,520 + Xcc-8004.4755.1 0.10 +3.8
4,524,520 + Xcc-8004.4755.1 0.10 -1.8
4,524,521 - Xcc-8004.4755.1 0.10 -0.5
4,524,521 - Xcc-8004.4755.1 0.10 +1.0
4,524,521 - Xcc-8004.4755.1 0.10 +1.2
4,524,521 - Xcc-8004.4755.1 0.10 +0.4
4,524,521 - Xcc-8004.4755.1 0.10 +0.1
4,524,521 - Xcc-8004.4755.1 0.10 +1.7
4,524,698 + Xcc-8004.4755.1 0.38 +0.1
4,524,761 + Xcc-8004.4755.1 0.48 -1.9
4,524,761 + Xcc-8004.4755.1 0.48 +0.4
4,524,761 + Xcc-8004.4755.1 0.48 +1.8
4,524,762 - Xcc-8004.4755.1 0.48 +0.6
4,524,808 + Xcc-8004.4755.1 0.55 -0.4
4,524,808 + Xcc-8004.4755.1 0.55 +0.3
4,524,809 - Xcc-8004.4755.1 0.55 +1.2
4,524,809 - Xcc-8004.4755.1 0.55 -0.7
4,524,809 - Xcc-8004.4755.1 0.55 -0.0
4,525,037 - -0.1
4,525,130 - +0.4
4,525,130 - +0.5
4,525,178 - -0.4
4,525,178 - +1.9
4,525,499 - Xcc-8004.4756.1 0.27 +0.3
4,525,510 + Xcc-8004.4756.1 0.28 +0.4
4,525,510 + Xcc-8004.4756.1 0.28 -0.5
4,525,510 + Xcc-8004.4756.1 0.28 -1.3
4,525,510 + Xcc-8004.4756.1 0.28 -0.6
4,525,510 + Xcc-8004.4756.1 0.28 -0.8
4,525,510 + Xcc-8004.4756.1 0.28 -1.3
4,525,510 + Xcc-8004.4756.1 0.28 +0.2
4,525,510 + Xcc-8004.4756.1 0.28 +0.0
4,525,510 + Xcc-8004.4756.1 0.28 -1.4
4,525,510 + Xcc-8004.4756.1 0.28 +0.3
4,525,511 - Xcc-8004.4756.1 0.28 +1.1
4,525,511 - Xcc-8004.4756.1 0.28 -2.8
4,525,511 - Xcc-8004.4756.1 0.28 -0.2
4,525,511 - Xcc-8004.4756.1 0.28 +2.9
4,525,511 - Xcc-8004.4756.1 0.28 -0.5
4,525,511 - Xcc-8004.4756.1 0.28 +0.6
4,525,511 - Xcc-8004.4756.1 0.28 -0.8
4,525,511 - Xcc-8004.4756.1 0.28 +0.5
4,525,511 - Xcc-8004.4756.1 0.28 +0.3
4,525,522 + Xcc-8004.4756.1 0.29 +2.1
4,525,522 + Xcc-8004.4756.1 0.29 +0.0
4,525,522 + Xcc-8004.4756.1 0.29 +0.5
4,525,522 + Xcc-8004.4756.1 0.29 -1.3
4,525,522 + Xcc-8004.4756.1 0.29 -0.4
4,525,522 + Xcc-8004.4756.1 0.29 -0.2
4,525,523 - Xcc-8004.4756.1 0.29 +1.4
4,525,822 + Xcc-8004.4756.1 0.51 -0.7
4,525,822 + Xcc-8004.4756.1 0.51 +0.5
4,525,822 + Xcc-8004.4756.1 0.51 +0.1
4,525,822 + Xcc-8004.4756.1 0.51 +0.4
4,525,822 + Xcc-8004.4756.1 0.51 +0.7
4,525,822 + Xcc-8004.4756.1 0.51 +1.0
4,525,823 - Xcc-8004.4756.1 0.51 +0.4
4,525,823 - Xcc-8004.4756.1 0.51 -2.5
4,525,823 - Xcc-8004.4756.1 0.51 +0.3
4,525,823 - Xcc-8004.4756.1 0.51 +0.9
4,525,823 - Xcc-8004.4756.1 0.51 +0.9
4,525,823 - Xcc-8004.4756.1 0.51 -1.9
4,525,999 + Xcc-8004.4756.1 0.64 +1.0
4,525,999 + Xcc-8004.4756.1 0.64 -0.7
4,526,000 - Xcc-8004.4756.1 0.64 +0.5
4,526,000 - Xcc-8004.4756.1 0.64 +0.2
4,526,000 - Xcc-8004.4756.1 0.64 +0.7
4,526,047 + Xcc-8004.4756.1 0.68 -3.3
4,526,047 + Xcc-8004.4756.1 0.68 -0.6
4,526,047 + Xcc-8004.4756.1 0.68 +0.6
4,526,048 - Xcc-8004.4756.1 0.68 +1.1
4,526,048 - Xcc-8004.4756.1 0.68 +1.2
4,526,048 - Xcc-8004.4756.1 0.68 +0.3
4,526,048 - Xcc-8004.4756.1 0.68 +0.6
4,526,048 - Xcc-8004.4756.1 0.68 -0.1
4,526,345 + Xcc-8004.4756.1 0.90 -0.3
4,526,345 + Xcc-8004.4756.1 0.90 -1.5
4,526,345 + Xcc-8004.4756.1 0.90 -0.9
4,526,345 + Xcc-8004.4756.1 0.90 +0.1
4,526,345 + Xcc-8004.4756.1 0.90 +0.6
4,526,345 + Xcc-8004.4756.1 0.90 -0.7
4,526,346 - Xcc-8004.4756.1 0.90 +0.7
4,526,346 - Xcc-8004.4756.1 0.90 +0.3
4,526,347 + Xcc-8004.4756.1 0.90 +0.4
4,526,348 - Xcc-8004.4756.1 0.90 -0.1
4,526,348 - Xcc-8004.4756.1 0.90 -1.0
4,526,386 + -1.3
4,526,538 + +0.0
4,526,538 + +0.5
4,527,385 + +1.2
4,527,385 + -0.6
4,527,385 + -1.1
4,527,386 - -0.8
4,527,438 - +1.7

Or see this region's nucleotide sequence