Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4277.1 and Xcc-8004.4278.1 overlap by 4 nucleotides Xcc-8004.4278.1 and Xcc-8004.4279.1 are separated by 54 nucleotides Xcc-8004.4279.1 and Xcc-8004.4280.1 overlap by 1 nucleotides Xcc-8004.4280.1 and Xcc-8004.4281.1 overlap by 1 nucleotides
Xcc-8004.4277.1: Xcc-8004.4277.1 - Thymidylate synthase (EC 2.1.1.45), at 4,093,834 to 4,094,628
Xcc-8004.4277.1
Xcc-8004.4278.1: Xcc-8004.4278.1 - Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-), at 4,094,625 to 4,095,515
Xcc-8004.4278.1
Xcc-8004.4279.1: Xcc-8004.4279.1 - FIG004694: Hypothetical protein, at 4,095,570 to 4,096,061
Xcc-8004.4279.1
Xcc-8004.4280.1: Xcc-8004.4280.1 - Beta-propeller domains of methanol dehydrogenase type, at 4,096,061 to 4,096,966
Xcc-8004.4280.1
Xcc-8004.4281.1: Xcc-8004.4281.1 - hypothetical protein, at 4,096,966 to 4,097,319
Xcc-8004.4281.1
Position (kb) 4095
4096
4097 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4095.509 kb on - strand at 4095.509 kb on - strand at 4095.560 kb on + strand at 4095.560 kb on + strand at 4095.560 kb on + strand at 4095.560 kb on + strand at 4095.560 kb on + strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.807 kb on + strand, within Xcc-8004.4279.1 at 4095.807 kb on + strand, within Xcc-8004.4279.1 at 4095.807 kb on + strand, within Xcc-8004.4279.1 at 4095.807 kb on + strand, within Xcc-8004.4279.1 at 4095.808 kb on - strand, within Xcc-8004.4279.1 at 4095.808 kb on - strand, within Xcc-8004.4279.1 at 4095.814 kb on + strand, within Xcc-8004.4279.1 at 4095.814 kb on + strand, within Xcc-8004.4279.1 at 4095.814 kb on + strand, within Xcc-8004.4279.1 at 4095.814 kb on + strand, within Xcc-8004.4279.1 at 4095.814 kb on + strand, within Xcc-8004.4279.1 at 4095.814 kb on + strand, within Xcc-8004.4279.1 at 4095.814 kb on + strand, within Xcc-8004.4279.1 at 4095.814 kb on + strand, within Xcc-8004.4279.1 at 4095.815 kb on - strand, within Xcc-8004.4279.1 at 4095.815 kb on - strand, within Xcc-8004.4279.1 at 4095.815 kb on - strand, within Xcc-8004.4279.1 at 4095.815 kb on - strand, within Xcc-8004.4279.1 at 4095.815 kb on - strand, within Xcc-8004.4279.1 at 4095.815 kb on - strand, within Xcc-8004.4279.1 at 4095.815 kb on - strand, within Xcc-8004.4279.1 at 4096.322 kb on + strand, within Xcc-8004.4280.1 at 4096.322 kb on + strand, within Xcc-8004.4280.1 at 4096.322 kb on + strand, within Xcc-8004.4280.1 at 4096.323 kb on - strand, within Xcc-8004.4280.1 at 4096.323 kb on - strand, within Xcc-8004.4280.1 at 4096.414 kb on + strand, within Xcc-8004.4280.1 at 4096.414 kb on + strand, within Xcc-8004.4280.1 at 4096.414 kb on + strand, within Xcc-8004.4280.1 at 4096.415 kb on - strand, within Xcc-8004.4280.1 at 4096.415 kb on - strand, within Xcc-8004.4280.1 at 4096.415 kb on - strand, within Xcc-8004.4280.1 at 4096.415 kb on - strand, within Xcc-8004.4280.1 at 4096.415 kb on - strand, within Xcc-8004.4280.1 at 4096.415 kb on - strand, within Xcc-8004.4280.1 at 4096.557 kb on + strand, within Xcc-8004.4280.1 at 4096.557 kb on + strand, within Xcc-8004.4280.1 at 4096.557 kb on + strand, within Xcc-8004.4280.1 at 4096.557 kb on + strand, within Xcc-8004.4280.1 at 4096.558 kb on - strand, within Xcc-8004.4280.1 at 4096.611 kb on + strand, within Xcc-8004.4280.1 at 4096.719 kb on + strand, within Xcc-8004.4280.1 at 4096.719 kb on + strand, within Xcc-8004.4280.1 at 4096.719 kb on + strand, within Xcc-8004.4280.1 at 4096.719 kb on + strand, within Xcc-8004.4280.1 at 4096.719 kb on + strand, within Xcc-8004.4280.1 at 4096.719 kb on + strand, within Xcc-8004.4280.1 at 4096.719 kb on + strand, within Xcc-8004.4280.1 at 4096.720 kb on - strand, within Xcc-8004.4280.1 at 4096.720 kb on - strand, within Xcc-8004.4280.1 at 4096.720 kb on - strand, within Xcc-8004.4280.1 at 4096.720 kb on - strand, within Xcc-8004.4280.1 at 4096.720 kb on - strand, within Xcc-8004.4280.1 at 4096.720 kb on - strand, within Xcc-8004.4280.1 at 4096.720 kb on - strand, within Xcc-8004.4280.1 at 4096.720 kb on - strand, within Xcc-8004.4280.1 at 4096.720 kb on - strand, within Xcc-8004.4280.1 at 4096.720 kb on - strand, within Xcc-8004.4280.1 at 4096.850 kb on - strand, within Xcc-8004.4280.1 at 4096.951 kb on - strand at 4096.967 kb on + strand at 4096.967 kb on + strand at 4096.967 kb on + strand at 4097.001 kb on + strand at 4097.001 kb on + strand at 4097.001 kb on + strand at 4097.001 kb on + strand at 4097.001 kb on + strand at 4097.002 kb on - strand, within Xcc-8004.4281.1 at 4097.002 kb on - strand, within Xcc-8004.4281.1 at 4097.002 kb on - strand, within Xcc-8004.4281.1 at 4097.002 kb on - strand, within Xcc-8004.4281.1 at 4097.002 kb on - strand, within Xcc-8004.4281.1 at 4097.002 kb on - strand, within Xcc-8004.4281.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,095,509 - +1.2 4,095,509 - -1.2 4,095,560 + +0.3 4,095,560 + +0.3 4,095,560 + -0.2 4,095,560 + +3.7 4,095,560 + -0.3 4,095,561 - +0.0 4,095,561 - -3.1 4,095,561 - +1.7 4,095,561 - -0.1 4,095,561 - -0.2 4,095,561 - -0.6 4,095,561 - -1.1 4,095,561 - +0.4 4,095,561 - -1.5 4,095,807 + Xcc-8004.4279.1 0.48 +2.1 4,095,807 + Xcc-8004.4279.1 0.48 +0.2 4,095,807 + Xcc-8004.4279.1 0.48 -0.6 4,095,807 + Xcc-8004.4279.1 0.48 -1.6 4,095,808 - Xcc-8004.4279.1 0.48 +0.6 4,095,808 - Xcc-8004.4279.1 0.48 +0.1 4,095,814 + Xcc-8004.4279.1 0.50 -0.6 4,095,814 + Xcc-8004.4279.1 0.50 +0.6 4,095,814 + Xcc-8004.4279.1 0.50 +0.2 4,095,814 + Xcc-8004.4279.1 0.50 +0.6 4,095,814 + Xcc-8004.4279.1 0.50 -0.3 4,095,814 + Xcc-8004.4279.1 0.50 -1.0 4,095,814 + Xcc-8004.4279.1 0.50 -0.8 4,095,814 + Xcc-8004.4279.1 0.50 +0.2 4,095,815 - Xcc-8004.4279.1 0.50 +0.4 4,095,815 - Xcc-8004.4279.1 0.50 +2.9 4,095,815 - Xcc-8004.4279.1 0.50 +0.2 4,095,815 - Xcc-8004.4279.1 0.50 +0.5 4,095,815 - Xcc-8004.4279.1 0.50 +2.7 4,095,815 - Xcc-8004.4279.1 0.50 -0.1 4,095,815 - Xcc-8004.4279.1 0.50 +0.8 4,096,322 + Xcc-8004.4280.1 0.29 -1.8 4,096,322 + Xcc-8004.4280.1 0.29 -1.4 4,096,322 + Xcc-8004.4280.1 0.29 +0.5 4,096,323 - Xcc-8004.4280.1 0.29 +1.2 4,096,323 - Xcc-8004.4280.1 0.29 -1.3 4,096,414 + Xcc-8004.4280.1 0.39 -0.3 4,096,414 + Xcc-8004.4280.1 0.39 -0.6 4,096,414 + Xcc-8004.4280.1 0.39 +0.8 4,096,415 - Xcc-8004.4280.1 0.39 -3.3 4,096,415 - Xcc-8004.4280.1 0.39 -0.7 4,096,415 - Xcc-8004.4280.1 0.39 -0.5 4,096,415 - Xcc-8004.4280.1 0.39 +1.7 4,096,415 - Xcc-8004.4280.1 0.39 +2.8 4,096,415 - Xcc-8004.4280.1 0.39 -0.7 4,096,557 + Xcc-8004.4280.1 0.55 +0.0 4,096,557 + Xcc-8004.4280.1 0.55 +1.2 4,096,557 + Xcc-8004.4280.1 0.55 -0.1 4,096,557 + Xcc-8004.4280.1 0.55 -1.1 4,096,558 - Xcc-8004.4280.1 0.55 -0.1 4,096,611 + Xcc-8004.4280.1 0.61 -0.7 4,096,719 + Xcc-8004.4280.1 0.73 +1.3 4,096,719 + Xcc-8004.4280.1 0.73 +2.1 4,096,719 + Xcc-8004.4280.1 0.73 -0.7 4,096,719 + Xcc-8004.4280.1 0.73 +1.8 4,096,719 + Xcc-8004.4280.1 0.73 +0.4 4,096,719 + Xcc-8004.4280.1 0.73 -0.7 4,096,719 + Xcc-8004.4280.1 0.73 +0.5 4,096,720 - Xcc-8004.4280.1 0.73 -0.7 4,096,720 - Xcc-8004.4280.1 0.73 -0.0 4,096,720 - Xcc-8004.4280.1 0.73 +0.4 4,096,720 - Xcc-8004.4280.1 0.73 -0.5 4,096,720 - Xcc-8004.4280.1 0.73 -1.8 4,096,720 - Xcc-8004.4280.1 0.73 -0.7 4,096,720 - Xcc-8004.4280.1 0.73 +0.7 4,096,720 - Xcc-8004.4280.1 0.73 -0.5 4,096,720 - Xcc-8004.4280.1 0.73 -2.6 4,096,720 - Xcc-8004.4280.1 0.73 +0.2 4,096,850 - Xcc-8004.4280.1 0.87 +0.6 4,096,951 - -1.1 4,096,967 + +1.7 4,096,967 + +0.3 4,096,967 + +0.2 4,097,001 + -1.1 4,097,001 + -1.5 4,097,001 + -0.8 4,097,001 + +0.3 4,097,001 + -1.3 4,097,002 - Xcc-8004.4281.1 0.10 +1.9 4,097,002 - Xcc-8004.4281.1 0.10 +0.5 4,097,002 - Xcc-8004.4281.1 0.10 +0.0 4,097,002 - Xcc-8004.4281.1 0.10 -0.6 4,097,002 - Xcc-8004.4281.1 0.10 +1.4 4,097,002 - Xcc-8004.4281.1 0.10 -1.7
Or see this region's nucleotide sequence