Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.372.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.371.1 and Xcc-8004.372.1 are separated by 427 nucleotidesXcc-8004.372.1 and Xcc-8004.373.1 overlap by 4 nucleotides Xcc-8004.371.1: Xcc-8004.371.1 - transcriptional regulator, at 352,897 to 354,093 Xcc-8004.371.1 Xcc-8004.372.1: Xcc-8004.372.1 - Endonuclease/Exonuclease/phosphatase family protein, at 354,521 to 355,282 Xcc-8004.372.1 Xcc-8004.373.1: Xcc-8004.373.1 - Cardiolipin synthetase (EC 2.7.8.-), at 355,279 to 356,298 Xcc-8004.373.1 Position (kb) 354 355 356Strain fitness (log2 ratio) -3 -2 -1 0 1at 353.613 kb on + strand, within Xcc-8004.371.1at 353.617 kb on + strand, within Xcc-8004.371.1at 353.618 kb on - strand, within Xcc-8004.371.1at 353.657 kb on + strand, within Xcc-8004.371.1at 353.657 kb on + strand, within Xcc-8004.371.1at 353.657 kb on + strand, within Xcc-8004.371.1at 353.657 kb on + strand, within Xcc-8004.371.1at 353.658 kb on - strand, within Xcc-8004.371.1at 353.658 kb on - strand, within Xcc-8004.371.1at 353.658 kb on - strand, within Xcc-8004.371.1at 353.658 kb on - strand, within Xcc-8004.371.1at 353.713 kb on + strand, within Xcc-8004.371.1at 353.713 kb on + strand, within Xcc-8004.371.1at 353.713 kb on + strand, within Xcc-8004.371.1at 353.713 kb on + strand, within Xcc-8004.371.1at 353.713 kb on + strand, within Xcc-8004.371.1at 353.713 kb on + strand, within Xcc-8004.371.1at 353.713 kb on + strand, within Xcc-8004.371.1at 353.714 kb on - strand, within Xcc-8004.371.1at 353.714 kb on - strand, within Xcc-8004.371.1at 354.138 kb on + strandat 354.146 kb on - strandat 354.171 kb on + strandat 354.171 kb on + strandat 354.172 kb on - strandat 354.220 kb on + strandat 354.221 kb on - strandat 354.328 kb on + strandat 354.328 kb on + strandat 354.328 kb on + strandat 354.328 kb on + strandat 354.329 kb on - strandat 354.329 kb on - strandat 354.352 kb on + strandat 354.353 kb on - strandat 354.353 kb on - strandat 354.356 kb on + strandat 354.356 kb on + strandat 354.357 kb on - strandat 354.371 kb on + strandat 354.371 kb on + strandat 354.732 kb on - strand, within Xcc-8004.372.1at 354.737 kb on + strand, within Xcc-8004.372.1at 354.738 kb on - strand, within Xcc-8004.372.1at 354.738 kb on - strand, within Xcc-8004.372.1at 354.770 kb on + strand, within Xcc-8004.372.1at 354.888 kb on + strand, within Xcc-8004.372.1at 354.889 kb on - strand, within Xcc-8004.372.1at 354.930 kb on + strand, within Xcc-8004.372.1at 354.931 kb on - strand, within Xcc-8004.372.1at 355.181 kb on + strand, within Xcc-8004.372.1at 355.181 kb on + strand, within Xcc-8004.372.1at 355.182 kb on - strand, within Xcc-8004.372.1at 355.182 kb on - strand, within Xcc-8004.372.1at 355.182 kb on - strand, within Xcc-8004.372.1at 355.271 kb on - strandat 355.349 kb on - strandat 355.349 kb on - strandat 355.349 kb on - strandat 355.349 kb on - strandat 355.363 kb on + strandat 355.485 kb on - strand, within Xcc-8004.373.1at 355.611 kb on + strand, within Xcc-8004.373.1at 355.611 kb on + strand, within Xcc-8004.373.1at 355.611 kb on + strand, within Xcc-8004.373.1at 355.611 kb on + strand, within Xcc-8004.373.1at 355.612 kb on - strand, within Xcc-8004.373.1at 355.875 kb on + strand, within Xcc-8004.373.1at 355.922 kb on - strand, within Xcc-8004.373.1at 355.972 kb on + strand, within Xcc-8004.373.1at 355.972 kb on + strand, within Xcc-8004.373.1at 355.973 kb on - strand, within Xcc-8004.373.1at 356.137 kb on + strand, within Xcc-8004.373.1at 356.137 kb on + strand, within Xcc-8004.373.1at 356.256 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
353,613 + Xcc-8004.371.1 0.60 -0.1
353,617 + Xcc-8004.371.1 0.60 -0.3
353,618 - Xcc-8004.371.1 0.60 -0.5
353,657 + Xcc-8004.371.1 0.63 +0.9
353,657 + Xcc-8004.371.1 0.63 -1.4
353,657 + Xcc-8004.371.1 0.63 -0.9
353,657 + Xcc-8004.371.1 0.63 +1.3
353,658 - Xcc-8004.371.1 0.64 -0.1
353,658 - Xcc-8004.371.1 0.64 -0.9
353,658 - Xcc-8004.371.1 0.64 +0.3
353,658 - Xcc-8004.371.1 0.64 +0.1
353,713 + Xcc-8004.371.1 0.68 +1.5
353,713 + Xcc-8004.371.1 0.68 +0.1
353,713 + Xcc-8004.371.1 0.68 +0.9
353,713 + Xcc-8004.371.1 0.68 +1.6
353,713 + Xcc-8004.371.1 0.68 -2.4
353,713 + Xcc-8004.371.1 0.68 -0.3
353,713 + Xcc-8004.371.1 0.68 -0.0
353,714 - Xcc-8004.371.1 0.68 -0.2
353,714 - Xcc-8004.371.1 0.68 +0.2
354,138 + +0.1
354,146 - +0.8
354,171 + -1.6
354,171 + -0.9
354,172 - -2.9
354,220 + +1.3
354,221 - +0.8
354,328 + -1.4
354,328 + +0.7
354,328 + -1.8
354,328 + +1.6
354,329 - -0.6
354,329 - -0.3
354,352 + +1.5
354,353 - -0.9
354,353 - -1.4
354,356 + -0.2
354,356 + +1.7
354,357 - +1.4
354,371 + -2.6
354,371 + +0.1
354,732 - Xcc-8004.372.1 0.28 -1.6
354,737 + Xcc-8004.372.1 0.28 +0.4
354,738 - Xcc-8004.372.1 0.28 -1.8
354,738 - Xcc-8004.372.1 0.28 -0.4
354,770 + Xcc-8004.372.1 0.33 -0.3
354,888 + Xcc-8004.372.1 0.48 -1.1
354,889 - Xcc-8004.372.1 0.48 +1.0
354,930 + Xcc-8004.372.1 0.54 -0.2
354,931 - Xcc-8004.372.1 0.54 -0.2
355,181 + Xcc-8004.372.1 0.87 +1.1
355,181 + Xcc-8004.372.1 0.87 +0.4
355,182 - Xcc-8004.372.1 0.87 -0.0
355,182 - Xcc-8004.372.1 0.87 -0.3
355,182 - Xcc-8004.372.1 0.87 -0.2
355,271 - +1.0
355,349 - -0.7
355,349 - -0.0
355,349 - -1.8
355,349 - -0.2
355,363 + +0.7
355,485 - Xcc-8004.373.1 0.20 +0.6
355,611 + Xcc-8004.373.1 0.33 -0.6
355,611 + Xcc-8004.373.1 0.33 -1.6
355,611 + Xcc-8004.373.1 0.33 -1.6
355,611 + Xcc-8004.373.1 0.33 -2.0
355,612 - Xcc-8004.373.1 0.33 +0.6
355,875 + Xcc-8004.373.1 0.58 -0.1
355,922 - Xcc-8004.373.1 0.63 -0.5
355,972 + Xcc-8004.373.1 0.68 -0.8
355,972 + Xcc-8004.373.1 0.68 -0.6
355,973 - Xcc-8004.373.1 0.68 -0.6
356,137 + Xcc-8004.373.1 0.84 +0.3
356,137 + Xcc-8004.373.1 0.84 +0.0
356,256 - -1.4

Or see this region's nucleotide sequence