Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.265.1 and Xcc-8004.266.1 are separated by 104 nucleotides Xcc-8004.266.1 and Xcc-8004.268.1 are separated by 29 nucleotides Xcc-8004.268.1 and Xcc-8004.269.1 are separated by 88 nucleotides
Xcc-8004.265.1: Xcc-8004.265.1 - Glycosyltransferase, at 258,299 to 259,108
Xcc-8004.265.1
Xcc-8004.266.1: Xcc-8004.266.1 - Histone acetyltransferase HPA2 and related acetyltransferases, at 259,213 to 259,698
Xcc-8004.266.1
Xcc-8004.268.1: Xcc-8004.268.1 - FIG01210356: hypothetical protein, at 259,728 to 260,150
Xcc-8004.268.1
Xcc-8004.269.1: Xcc-8004.269.1 - FIG136845: Rhodanese-related sulfurtransferase, at 260,239 to 260,676
Xcc-8004.269.1
Position (kb) 259
260 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.239 kb on + strand at 258.239 kb on + strand at 258.239 kb on + strand at 258.239 kb on + strand at 258.239 kb on + strand at 258.239 kb on + strand at 258.239 kb on + strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.249 kb on + strand at 258.250 kb on - strand at 258.311 kb on + strand at 258.311 kb on + strand at 258.311 kb on + strand at 258.311 kb on + strand at 258.311 kb on + strand at 258.312 kb on - strand at 258.312 kb on - strand at 258.312 kb on - strand at 258.312 kb on - strand at 258.312 kb on - strand at 258.312 kb on - strand at 258.312 kb on - strand at 258.499 kb on + strand, within Xcc-8004.265.1 at 258.499 kb on + strand, within Xcc-8004.265.1 at 258.499 kb on + strand, within Xcc-8004.265.1 at 258.500 kb on - strand, within Xcc-8004.265.1 at 258.579 kb on - strand, within Xcc-8004.265.1 at 258.579 kb on - strand, within Xcc-8004.265.1 at 258.630 kb on + strand, within Xcc-8004.265.1 at 258.630 kb on + strand, within Xcc-8004.265.1 at 258.689 kb on + strand, within Xcc-8004.265.1 at 258.689 kb on + strand, within Xcc-8004.265.1 at 258.689 kb on + strand, within Xcc-8004.265.1 at 258.689 kb on + strand, within Xcc-8004.265.1 at 258.689 kb on + strand, within Xcc-8004.265.1 at 258.689 kb on + strand, within Xcc-8004.265.1 at 258.690 kb on - strand, within Xcc-8004.265.1 at 258.690 kb on - strand, within Xcc-8004.265.1 at 258.690 kb on - strand, within Xcc-8004.265.1 at 258.690 kb on - strand, within Xcc-8004.265.1 at 258.690 kb on - strand, within Xcc-8004.265.1 at 258.764 kb on + strand, within Xcc-8004.265.1 at 258.764 kb on + strand, within Xcc-8004.265.1 at 258.764 kb on + strand, within Xcc-8004.265.1 at 258.764 kb on + strand, within Xcc-8004.265.1 at 258.765 kb on - strand, within Xcc-8004.265.1 at 258.765 kb on - strand, within Xcc-8004.265.1 at 258.765 kb on - strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.917 kb on + strand, within Xcc-8004.265.1 at 258.917 kb on + strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 259.071 kb on + strand at 259.071 kb on + strand at 259.072 kb on - strand at 259.072 kb on - strand at 259.115 kb on + strand at 259.116 kb on - strand at 259.135 kb on - strand at 259.144 kb on + strand at 259.158 kb on + strand at 259.158 kb on + strand at 259.159 kb on - strand at 259.159 kb on - strand at 259.421 kb on + strand, within Xcc-8004.266.1 at 259.421 kb on + strand, within Xcc-8004.266.1 at 259.421 kb on + strand, within Xcc-8004.266.1 at 259.421 kb on + strand, within Xcc-8004.266.1 at 259.483 kb on + strand, within Xcc-8004.266.1 at 259.483 kb on + strand, within Xcc-8004.266.1 at 259.483 kb on + strand, within Xcc-8004.266.1 at 259.483 kb on + strand, within Xcc-8004.266.1 at 259.483 kb on + strand, within Xcc-8004.266.1 at 259.483 kb on + strand, within Xcc-8004.266.1 at 259.483 kb on + strand, within Xcc-8004.266.1 at 259.483 kb on + strand, within Xcc-8004.266.1 at 259.483 kb on + strand, within Xcc-8004.266.1 at 259.484 kb on - strand, within Xcc-8004.266.1 at 259.484 kb on - strand, within Xcc-8004.266.1 at 259.484 kb on - strand, within Xcc-8004.266.1 at 259.484 kb on - strand, within Xcc-8004.266.1 at 259.484 kb on - strand, within Xcc-8004.266.1 at 259.484 kb on - strand, within Xcc-8004.266.1 at 259.484 kb on - strand, within Xcc-8004.266.1 at 259.484 kb on - strand, within Xcc-8004.266.1 at 259.484 kb on - strand, within Xcc-8004.266.1 at 259.484 kb on - strand, within Xcc-8004.266.1 at 259.507 kb on + strand, within Xcc-8004.266.1 at 259.507 kb on + strand, within Xcc-8004.266.1 at 259.507 kb on + strand, within Xcc-8004.266.1 at 259.507 kb on + strand, within Xcc-8004.266.1 at 259.507 kb on + strand, within Xcc-8004.266.1 at 259.507 kb on + strand, within Xcc-8004.266.1 at 259.508 kb on - strand, within Xcc-8004.266.1 at 259.508 kb on - strand, within Xcc-8004.266.1 at 259.522 kb on + strand, within Xcc-8004.266.1 at 259.522 kb on + strand, within Xcc-8004.266.1 at 259.522 kb on + strand, within Xcc-8004.266.1 at 259.523 kb on - strand, within Xcc-8004.266.1 at 259.523 kb on - strand, within Xcc-8004.266.1 at 259.523 kb on - strand, within Xcc-8004.266.1 at 259.523 kb on - strand, within Xcc-8004.266.1 at 259.523 kb on - strand, within Xcc-8004.266.1 at 259.696 kb on + strand at 259.696 kb on + strand at 259.697 kb on - strand at 259.697 kb on - strand at 259.697 kb on - strand at 259.839 kb on + strand, within Xcc-8004.268.1 at 259.839 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.942 kb on - strand, within Xcc-8004.268.1 at 260.042 kb on + strand, within Xcc-8004.268.1 at 260.042 kb on + strand, within Xcc-8004.268.1 at 260.042 kb on + strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.148 kb on + strand at 260.148 kb on + strand at 260.148 kb on + strand at 260.149 kb on - strand at 260.149 kb on - strand at 260.191 kb on - strand at 260.191 kb on - strand at 260.191 kb on - strand at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.609 kb on - strand, within Xcc-8004.269.1 at 260.609 kb on - strand, within Xcc-8004.269.1 at 260.609 kb on - strand, within Xcc-8004.269.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 258,214 + +1.4 258,214 + -0.3 258,214 + +0.2 258,214 + -0.4 258,214 + -2.0 258,214 + -1.2 258,214 + +0.7 258,214 + +1.0 258,214 + +0.2 258,214 + +1.4 258,215 - -0.3 258,215 - -1.4 258,215 - -0.6 258,215 - +0.8 258,215 - -0.0 258,215 - -0.8 258,215 - +1.4 258,215 - +0.4 258,215 - -0.9 258,215 - +1.4 258,215 - -0.2 258,239 + -0.1 258,239 + -0.4 258,239 + +2.5 258,239 + -0.3 258,239 + -0.8 258,239 + +0.3 258,239 + -0.1 258,240 - -2.3 258,240 - -0.9 258,240 - +0.9 258,240 - -1.7 258,240 - -1.1 258,240 - -1.2 258,240 - -1.4 258,240 - +2.3 258,240 - -1.9 258,249 + -0.5 258,250 - -0.5 258,311 + -0.6 258,311 + -0.9 258,311 + +1.2 258,311 + +1.1 258,311 + -0.0 258,312 - -0.5 258,312 - -1.0 258,312 - +0.9 258,312 - -1.7 258,312 - +1.8 258,312 - -1.1 258,312 - -1.5 258,499 + Xcc-8004.265.1 0.25 -2.9 258,499 + Xcc-8004.265.1 0.25 +1.0 258,499 + Xcc-8004.265.1 0.25 -2.6 258,500 - Xcc-8004.265.1 0.25 -1.8 258,579 - Xcc-8004.265.1 0.35 +0.9 258,579 - Xcc-8004.265.1 0.35 +0.3 258,630 + Xcc-8004.265.1 0.41 -2.7 258,630 + Xcc-8004.265.1 0.41 +2.3 258,689 + Xcc-8004.265.1 0.48 -0.4 258,689 + Xcc-8004.265.1 0.48 +1.0 258,689 + Xcc-8004.265.1 0.48 -1.8 258,689 + Xcc-8004.265.1 0.48 -1.5 258,689 + Xcc-8004.265.1 0.48 +0.3 258,689 + Xcc-8004.265.1 0.48 -1.2 258,690 - Xcc-8004.265.1 0.48 -0.5 258,690 - Xcc-8004.265.1 0.48 -0.0 258,690 - Xcc-8004.265.1 0.48 +0.0 258,690 - Xcc-8004.265.1 0.48 -0.6 258,690 - Xcc-8004.265.1 0.48 -0.5 258,764 + Xcc-8004.265.1 0.57 -1.0 258,764 + Xcc-8004.265.1 0.57 -0.1 258,764 + Xcc-8004.265.1 0.57 +0.4 258,764 + Xcc-8004.265.1 0.57 -0.7 258,765 - Xcc-8004.265.1 0.58 -0.4 258,765 - Xcc-8004.265.1 0.58 +0.3 258,765 - Xcc-8004.265.1 0.58 +0.2 258,871 + Xcc-8004.265.1 0.71 -0.6 258,871 + Xcc-8004.265.1 0.71 +0.2 258,871 + Xcc-8004.265.1 0.71 +0.9 258,871 + Xcc-8004.265.1 0.71 +0.9 258,871 + Xcc-8004.265.1 0.71 -0.2 258,871 + Xcc-8004.265.1 0.71 -0.6 258,871 + Xcc-8004.265.1 0.71 +0.1 258,871 + Xcc-8004.265.1 0.71 -1.2 258,871 + Xcc-8004.265.1 0.71 +0.3 258,871 + Xcc-8004.265.1 0.71 +1.4 258,871 + Xcc-8004.265.1 0.71 -1.6 258,871 + Xcc-8004.265.1 0.71 -0.1 258,871 + Xcc-8004.265.1 0.71 -2.2 258,871 + Xcc-8004.265.1 0.71 +1.4 258,871 + Xcc-8004.265.1 0.71 +0.0 258,871 + Xcc-8004.265.1 0.71 -1.5 258,871 + Xcc-8004.265.1 0.71 -2.0 258,871 + Xcc-8004.265.1 0.71 +0.1 258,871 + Xcc-8004.265.1 0.71 -0.5 258,871 + Xcc-8004.265.1 0.71 -0.7 258,871 + Xcc-8004.265.1 0.71 -1.5 258,871 + Xcc-8004.265.1 0.71 +1.4 258,872 - Xcc-8004.265.1 0.71 +0.2 258,872 - Xcc-8004.265.1 0.71 -1.0 258,872 - Xcc-8004.265.1 0.71 +1.6 258,872 - Xcc-8004.265.1 0.71 -0.5 258,872 - Xcc-8004.265.1 0.71 +0.4 258,872 - Xcc-8004.265.1 0.71 -1.3 258,872 - Xcc-8004.265.1 0.71 -0.3 258,872 - Xcc-8004.265.1 0.71 -0.2 258,872 - Xcc-8004.265.1 0.71 -0.5 258,872 - Xcc-8004.265.1 0.71 +0.9 258,917 + Xcc-8004.265.1 0.76 +1.3 258,917 + Xcc-8004.265.1 0.76 -0.7 258,918 - Xcc-8004.265.1 0.76 -1.6 258,918 - Xcc-8004.265.1 0.76 -0.6 258,918 - Xcc-8004.265.1 0.76 +0.7 258,918 - Xcc-8004.265.1 0.76 +2.1 258,918 - Xcc-8004.265.1 0.76 +1.0 258,918 - Xcc-8004.265.1 0.76 -0.2 258,918 - Xcc-8004.265.1 0.76 +0.0 258,918 - Xcc-8004.265.1 0.76 +0.6 258,918 - Xcc-8004.265.1 0.76 -0.3 259,071 + -0.5 259,071 + +0.5 259,072 - +2.3 259,072 - +2.1 259,115 + +0.5 259,116 - -0.5 259,135 - +0.7 259,144 + -0.7 259,158 + -0.0 259,158 + -0.7 259,159 - +0.9 259,159 - +0.2 259,421 + Xcc-8004.266.1 0.43 +1.5 259,421 + Xcc-8004.266.1 0.43 -0.9 259,421 + Xcc-8004.266.1 0.43 -2.2 259,421 + Xcc-8004.266.1 0.43 -1.4 259,483 + Xcc-8004.266.1 0.56 -0.5 259,483 + Xcc-8004.266.1 0.56 -0.6 259,483 + Xcc-8004.266.1 0.56 -0.2 259,483 + Xcc-8004.266.1 0.56 +1.3 259,483 + Xcc-8004.266.1 0.56 -1.3 259,483 + Xcc-8004.266.1 0.56 -0.3 259,483 + Xcc-8004.266.1 0.56 +0.2 259,483 + Xcc-8004.266.1 0.56 -0.9 259,483 + Xcc-8004.266.1 0.56 -1.2 259,484 - Xcc-8004.266.1 0.56 +0.1 259,484 - Xcc-8004.266.1 0.56 -3.4 259,484 - Xcc-8004.266.1 0.56 +0.3 259,484 - Xcc-8004.266.1 0.56 +1.3 259,484 - Xcc-8004.266.1 0.56 +0.6 259,484 - Xcc-8004.266.1 0.56 +0.6 259,484 - Xcc-8004.266.1 0.56 +2.2 259,484 - Xcc-8004.266.1 0.56 +0.5 259,484 - Xcc-8004.266.1 0.56 -0.0 259,484 - Xcc-8004.266.1 0.56 -2.6 259,507 + Xcc-8004.266.1 0.60 -0.3 259,507 + Xcc-8004.266.1 0.60 +1.2 259,507 + Xcc-8004.266.1 0.60 -1.9 259,507 + Xcc-8004.266.1 0.60 +0.3 259,507 + Xcc-8004.266.1 0.60 +1.7 259,507 + Xcc-8004.266.1 0.60 -3.1 259,508 - Xcc-8004.266.1 0.61 -2.6 259,508 - Xcc-8004.266.1 0.61 -1.8 259,522 + Xcc-8004.266.1 0.64 -0.8 259,522 + Xcc-8004.266.1 0.64 +1.5 259,522 + Xcc-8004.266.1 0.64 -1.4 259,523 - Xcc-8004.266.1 0.64 -1.0 259,523 - Xcc-8004.266.1 0.64 -0.6 259,523 - Xcc-8004.266.1 0.64 -0.3 259,523 - Xcc-8004.266.1 0.64 +1.4 259,523 - Xcc-8004.266.1 0.64 +0.8 259,696 + -0.4 259,696 + -0.7 259,697 - -2.1 259,697 - +0.4 259,697 - -0.5 259,839 + Xcc-8004.268.1 0.26 -0.0 259,839 + Xcc-8004.268.1 0.26 -1.0 259,899 + Xcc-8004.268.1 0.40 +0.2 259,899 + Xcc-8004.268.1 0.40 +0.7 259,899 + Xcc-8004.268.1 0.40 -0.1 259,899 + Xcc-8004.268.1 0.40 -0.7 259,899 + Xcc-8004.268.1 0.40 -0.8 259,899 + Xcc-8004.268.1 0.40 -0.3 259,899 + Xcc-8004.268.1 0.40 -0.0 259,899 + Xcc-8004.268.1 0.40 -0.5 259,899 + Xcc-8004.268.1 0.40 +1.1 259,899 + Xcc-8004.268.1 0.40 -0.2 259,900 - Xcc-8004.268.1 0.41 +0.4 259,900 - Xcc-8004.268.1 0.41 +1.1 259,900 - Xcc-8004.268.1 0.41 -0.8 259,900 - Xcc-8004.268.1 0.41 -0.0 259,900 - Xcc-8004.268.1 0.41 -2.1 259,900 - Xcc-8004.268.1 0.41 +0.4 259,900 - Xcc-8004.268.1 0.41 +1.9 259,900 - Xcc-8004.268.1 0.41 -1.1 259,900 - Xcc-8004.268.1 0.41 +0.8 259,900 - Xcc-8004.268.1 0.41 +1.6 259,900 - Xcc-8004.268.1 0.41 -2.4 259,942 - Xcc-8004.268.1 0.51 +1.1 260,042 + Xcc-8004.268.1 0.74 +0.3 260,042 + Xcc-8004.268.1 0.74 +0.7 260,042 + Xcc-8004.268.1 0.74 +1.4 260,043 - Xcc-8004.268.1 0.74 -0.7 260,043 - Xcc-8004.268.1 0.74 -1.7 260,043 - Xcc-8004.268.1 0.74 +0.4 260,043 - Xcc-8004.268.1 0.74 +0.7 260,043 - Xcc-8004.268.1 0.74 -0.5 260,148 + -0.4 260,148 + +2.7 260,148 + -1.0 260,149 - +0.9 260,149 - -1.2 260,191 - -2.3 260,191 - +0.5 260,191 - +1.2 260,608 + Xcc-8004.269.1 0.84 -1.1 260,608 + Xcc-8004.269.1 0.84 -2.2 260,608 + Xcc-8004.269.1 0.84 -0.4 260,608 + Xcc-8004.269.1 0.84 -0.0 260,608 + Xcc-8004.269.1 0.84 +0.7 260,609 - Xcc-8004.269.1 0.84 -2.0 260,609 - Xcc-8004.269.1 0.84 -1.7 260,609 - Xcc-8004.269.1 0.84 -0.7
Or see this region's nucleotide sequence