Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.263.1 and Xcc-8004.264.1 are separated by 103 nucleotides Xcc-8004.264.1 and Xcc-8004.265.1 are separated by 184 nucleotides
Xcc-8004.263.1: Xcc-8004.263.1 - Distant homolog of E. coli HemX protein in Xanthomonadaceae, at 256,233 to 257,210
Xcc-8004.263.1
Xcc-8004.264.1: Xcc-8004.264.1 - Uroporphyrinogen-III synthase (EC 4.2.1.75), at 257,314 to 258,114
Xcc-8004.264.1
Xcc-8004.265.1: Xcc-8004.265.1 - Glycosyltransferase, at 258,299 to 259,108
Xcc-8004.265.1
Position (kb) 257
258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 256.404 kb on + strand, within Xcc-8004.263.1 at 256.729 kb on + strand, within Xcc-8004.263.1 at 256.729 kb on + strand, within Xcc-8004.263.1 at 256.729 kb on + strand, within Xcc-8004.263.1 at 256.730 kb on - strand, within Xcc-8004.263.1 at 256.730 kb on - strand, within Xcc-8004.263.1 at 256.730 kb on - strand, within Xcc-8004.263.1 at 256.730 kb on - strand, within Xcc-8004.263.1 at 256.774 kb on + strand, within Xcc-8004.263.1 at 256.775 kb on - strand, within Xcc-8004.263.1 at 256.775 kb on - strand, within Xcc-8004.263.1 at 256.775 kb on - strand, within Xcc-8004.263.1 at 257.095 kb on + strand, within Xcc-8004.263.1 at 257.095 kb on + strand, within Xcc-8004.263.1 at 257.096 kb on - strand, within Xcc-8004.263.1 at 257.096 kb on - strand, within Xcc-8004.263.1 at 257.096 kb on - strand, within Xcc-8004.263.1 at 257.096 kb on - strand, within Xcc-8004.263.1 at 257.096 kb on - strand, within Xcc-8004.263.1 at 257.096 kb on - strand, within Xcc-8004.263.1 at 257.096 kb on - strand, within Xcc-8004.263.1 at 258.099 kb on + strand at 258.099 kb on + strand at 258.099 kb on + strand at 258.099 kb on + strand at 258.099 kb on + strand at 258.100 kb on - strand at 258.116 kb on + strand at 258.116 kb on + strand at 258.116 kb on + strand at 258.116 kb on + strand at 258.116 kb on + strand at 258.116 kb on + strand at 258.116 kb on + strand at 258.116 kb on + strand at 258.116 kb on + strand at 258.116 kb on + strand at 258.116 kb on + strand at 258.117 kb on - strand at 258.117 kb on - strand at 258.117 kb on - strand at 258.117 kb on - strand at 258.117 kb on - strand at 258.117 kb on - strand at 258.117 kb on - strand at 258.117 kb on - strand at 258.158 kb on + strand at 258.158 kb on + strand at 258.159 kb on - strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.214 kb on + strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.215 kb on - strand at 258.239 kb on + strand at 258.239 kb on + strand at 258.239 kb on + strand at 258.239 kb on + strand at 258.239 kb on + strand at 258.239 kb on + strand at 258.239 kb on + strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.240 kb on - strand at 258.249 kb on + strand at 258.250 kb on - strand at 258.311 kb on + strand at 258.311 kb on + strand at 258.311 kb on + strand at 258.311 kb on + strand at 258.311 kb on + strand at 258.312 kb on - strand at 258.312 kb on - strand at 258.312 kb on - strand at 258.312 kb on - strand at 258.312 kb on - strand at 258.312 kb on - strand at 258.312 kb on - strand at 258.499 kb on + strand, within Xcc-8004.265.1 at 258.499 kb on + strand, within Xcc-8004.265.1 at 258.499 kb on + strand, within Xcc-8004.265.1 at 258.500 kb on - strand, within Xcc-8004.265.1 at 258.579 kb on - strand, within Xcc-8004.265.1 at 258.579 kb on - strand, within Xcc-8004.265.1 at 258.630 kb on + strand, within Xcc-8004.265.1 at 258.630 kb on + strand, within Xcc-8004.265.1 at 258.689 kb on + strand, within Xcc-8004.265.1 at 258.689 kb on + strand, within Xcc-8004.265.1 at 258.689 kb on + strand, within Xcc-8004.265.1 at 258.689 kb on + strand, within Xcc-8004.265.1 at 258.689 kb on + strand, within Xcc-8004.265.1 at 258.689 kb on + strand, within Xcc-8004.265.1 at 258.690 kb on - strand, within Xcc-8004.265.1 at 258.690 kb on - strand, within Xcc-8004.265.1 at 258.690 kb on - strand, within Xcc-8004.265.1 at 258.690 kb on - strand, within Xcc-8004.265.1 at 258.690 kb on - strand, within Xcc-8004.265.1 at 258.764 kb on + strand, within Xcc-8004.265.1 at 258.764 kb on + strand, within Xcc-8004.265.1 at 258.764 kb on + strand, within Xcc-8004.265.1 at 258.764 kb on + strand, within Xcc-8004.265.1 at 258.765 kb on - strand, within Xcc-8004.265.1 at 258.765 kb on - strand, within Xcc-8004.265.1 at 258.765 kb on - strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.871 kb on + strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.872 kb on - strand, within Xcc-8004.265.1 at 258.917 kb on + strand, within Xcc-8004.265.1 at 258.917 kb on + strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 258.918 kb on - strand, within Xcc-8004.265.1 at 259.071 kb on + strand at 259.071 kb on + strand at 259.072 kb on - strand at 259.072 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 256,404 + Xcc-8004.263.1 0.17 +1.6 256,729 + Xcc-8004.263.1 0.51 +0.3 256,729 + Xcc-8004.263.1 0.51 +0.4 256,729 + Xcc-8004.263.1 0.51 +1.9 256,730 - Xcc-8004.263.1 0.51 +0.1 256,730 - Xcc-8004.263.1 0.51 -1.3 256,730 - Xcc-8004.263.1 0.51 -0.9 256,730 - Xcc-8004.263.1 0.51 +1.3 256,774 + Xcc-8004.263.1 0.55 -0.8 256,775 - Xcc-8004.263.1 0.55 +0.6 256,775 - Xcc-8004.263.1 0.55 +0.5 256,775 - Xcc-8004.263.1 0.55 +0.6 257,095 + Xcc-8004.263.1 0.88 -1.5 257,095 + Xcc-8004.263.1 0.88 +0.9 257,096 - Xcc-8004.263.1 0.88 -0.3 257,096 - Xcc-8004.263.1 0.88 +0.2 257,096 - Xcc-8004.263.1 0.88 +1.1 257,096 - Xcc-8004.263.1 0.88 -2.9 257,096 - Xcc-8004.263.1 0.88 +0.9 257,096 - Xcc-8004.263.1 0.88 +1.0 257,096 - Xcc-8004.263.1 0.88 -1.9 258,099 + -2.3 258,099 + -2.8 258,099 + +0.3 258,099 + +0.1 258,099 + +1.6 258,100 - -2.4 258,116 + -1.2 258,116 + +1.5 258,116 + -0.4 258,116 + -2.8 258,116 + +0.5 258,116 + -1.7 258,116 + +1.4 258,116 + +2.9 258,116 + +0.2 258,116 + -0.6 258,116 + -0.3 258,117 - -1.2 258,117 - -2.9 258,117 - +0.6 258,117 - -0.0 258,117 - -0.8 258,117 - +1.5 258,117 - -0.2 258,117 - -0.6 258,158 + +0.2 258,158 + -0.3 258,159 - -0.3 258,214 + +1.4 258,214 + -0.3 258,214 + +0.2 258,214 + -0.4 258,214 + -2.0 258,214 + -1.2 258,214 + +0.7 258,214 + +1.0 258,214 + +0.2 258,214 + +1.4 258,215 - -0.3 258,215 - -1.4 258,215 - -0.6 258,215 - +0.8 258,215 - -0.0 258,215 - -0.8 258,215 - +1.4 258,215 - +0.4 258,215 - -0.9 258,215 - +1.4 258,215 - -0.2 258,239 + -0.1 258,239 + -0.4 258,239 + +2.5 258,239 + -0.3 258,239 + -0.8 258,239 + +0.3 258,239 + -0.1 258,240 - -2.3 258,240 - -0.9 258,240 - +0.9 258,240 - -1.7 258,240 - -1.1 258,240 - -1.2 258,240 - -1.4 258,240 - +2.3 258,240 - -1.9 258,249 + -0.5 258,250 - -0.5 258,311 + -0.6 258,311 + -0.9 258,311 + +1.2 258,311 + +1.1 258,311 + -0.0 258,312 - -0.5 258,312 - -1.0 258,312 - +0.9 258,312 - -1.7 258,312 - +1.8 258,312 - -1.1 258,312 - -1.5 258,499 + Xcc-8004.265.1 0.25 -2.9 258,499 + Xcc-8004.265.1 0.25 +1.0 258,499 + Xcc-8004.265.1 0.25 -2.6 258,500 - Xcc-8004.265.1 0.25 -1.8 258,579 - Xcc-8004.265.1 0.35 +0.9 258,579 - Xcc-8004.265.1 0.35 +0.3 258,630 + Xcc-8004.265.1 0.41 -2.7 258,630 + Xcc-8004.265.1 0.41 +2.3 258,689 + Xcc-8004.265.1 0.48 -0.4 258,689 + Xcc-8004.265.1 0.48 +1.0 258,689 + Xcc-8004.265.1 0.48 -1.8 258,689 + Xcc-8004.265.1 0.48 -1.5 258,689 + Xcc-8004.265.1 0.48 +0.3 258,689 + Xcc-8004.265.1 0.48 -1.2 258,690 - Xcc-8004.265.1 0.48 -0.5 258,690 - Xcc-8004.265.1 0.48 -0.0 258,690 - Xcc-8004.265.1 0.48 +0.0 258,690 - Xcc-8004.265.1 0.48 -0.6 258,690 - Xcc-8004.265.1 0.48 -0.5 258,764 + Xcc-8004.265.1 0.57 -1.0 258,764 + Xcc-8004.265.1 0.57 -0.1 258,764 + Xcc-8004.265.1 0.57 +0.4 258,764 + Xcc-8004.265.1 0.57 -0.7 258,765 - Xcc-8004.265.1 0.58 -0.4 258,765 - Xcc-8004.265.1 0.58 +0.3 258,765 - Xcc-8004.265.1 0.58 +0.2 258,871 + Xcc-8004.265.1 0.71 -0.6 258,871 + Xcc-8004.265.1 0.71 +0.2 258,871 + Xcc-8004.265.1 0.71 +0.9 258,871 + Xcc-8004.265.1 0.71 +0.9 258,871 + Xcc-8004.265.1 0.71 -0.2 258,871 + Xcc-8004.265.1 0.71 -0.6 258,871 + Xcc-8004.265.1 0.71 +0.1 258,871 + Xcc-8004.265.1 0.71 -1.2 258,871 + Xcc-8004.265.1 0.71 +0.3 258,871 + Xcc-8004.265.1 0.71 +1.4 258,871 + Xcc-8004.265.1 0.71 -1.6 258,871 + Xcc-8004.265.1 0.71 -0.1 258,871 + Xcc-8004.265.1 0.71 -2.2 258,871 + Xcc-8004.265.1 0.71 +1.4 258,871 + Xcc-8004.265.1 0.71 +0.0 258,871 + Xcc-8004.265.1 0.71 -1.5 258,871 + Xcc-8004.265.1 0.71 -2.0 258,871 + Xcc-8004.265.1 0.71 +0.1 258,871 + Xcc-8004.265.1 0.71 -0.5 258,871 + Xcc-8004.265.1 0.71 -0.7 258,871 + Xcc-8004.265.1 0.71 -1.5 258,871 + Xcc-8004.265.1 0.71 +1.4 258,872 - Xcc-8004.265.1 0.71 +0.2 258,872 - Xcc-8004.265.1 0.71 -1.0 258,872 - Xcc-8004.265.1 0.71 +1.6 258,872 - Xcc-8004.265.1 0.71 -0.5 258,872 - Xcc-8004.265.1 0.71 +0.4 258,872 - Xcc-8004.265.1 0.71 -1.3 258,872 - Xcc-8004.265.1 0.71 -0.3 258,872 - Xcc-8004.265.1 0.71 -0.2 258,872 - Xcc-8004.265.1 0.71 -0.5 258,872 - Xcc-8004.265.1 0.71 +0.9 258,917 + Xcc-8004.265.1 0.76 +1.3 258,917 + Xcc-8004.265.1 0.76 -0.7 258,918 - Xcc-8004.265.1 0.76 -1.6 258,918 - Xcc-8004.265.1 0.76 -0.6 258,918 - Xcc-8004.265.1 0.76 +0.7 258,918 - Xcc-8004.265.1 0.76 +2.1 258,918 - Xcc-8004.265.1 0.76 +1.0 258,918 - Xcc-8004.265.1 0.76 -0.2 258,918 - Xcc-8004.265.1 0.76 +0.0 258,918 - Xcc-8004.265.1 0.76 +0.6 258,918 - Xcc-8004.265.1 0.76 -0.3 259,071 + -0.5 259,071 + +0.5 259,072 - +2.3 259,072 - +2.1
Or see this region's nucleotide sequence