Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2034.1 and Xcc-8004.2038.1 are separated by 574 nucleotides Xcc-8004.2038.1 and Xcc-8004.2039.1 are separated by 33 nucleotides
Xcc-8004.2034.1: Xcc-8004.2034.1 - Excinuclease ABC subunit B, at 1,953,215 to 1,955,236
Xcc-8004.2034.1
Xcc-8004.2038.1: Xcc-8004.2038.1 - FIG01210607: hypothetical protein, at 1,955,811 to 1,956,053
Xcc-8004.2038.1
Xcc-8004.2039.1: Xcc-8004.2039.1 - hypothetical protein, at 1,956,087 to 1,957,760
Xcc-8004.2039.1
Position (kb) 1955
1956
1957 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1954.871 kb on + strand, within Xcc-8004.2034.1 at 1954.872 kb on - strand, within Xcc-8004.2034.1 at 1954.872 kb on - strand, within Xcc-8004.2034.1 at 1954.946 kb on + strand, within Xcc-8004.2034.1 at 1954.946 kb on + strand, within Xcc-8004.2034.1 at 1954.947 kb on - strand, within Xcc-8004.2034.1 at 1954.947 kb on - strand, within Xcc-8004.2034.1 at 1954.947 kb on - strand, within Xcc-8004.2034.1 at 1954.947 kb on - strand, within Xcc-8004.2034.1 at 1955.150 kb on + strand at 1955.150 kb on + strand at 1955.150 kb on + strand at 1955.150 kb on + strand at 1955.150 kb on + strand at 1955.150 kb on + strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.411 kb on + strand at 1955.411 kb on + strand at 1955.411 kb on + strand at 1955.411 kb on + strand at 1955.411 kb on + strand at 1955.411 kb on + strand at 1955.411 kb on + strand at 1955.412 kb on - strand at 1955.412 kb on - strand at 1955.499 kb on + strand at 1955.500 kb on - strand at 1955.527 kb on + strand at 1955.527 kb on + strand at 1955.528 kb on - strand at 1955.625 kb on + strand at 1955.665 kb on + strand at 1955.665 kb on + strand at 1955.665 kb on + strand at 1955.665 kb on + strand at 1955.665 kb on + strand at 1955.666 kb on - strand at 1955.666 kb on - strand at 1955.675 kb on + strand at 1955.676 kb on - strand at 1955.676 kb on - strand at 1955.772 kb on + strand at 1955.772 kb on + strand at 1955.772 kb on + strand at 1955.772 kb on + strand at 1955.773 kb on - strand at 1955.773 kb on - strand at 1955.773 kb on - strand at 1955.773 kb on - strand at 1955.820 kb on + strand at 1955.820 kb on + strand at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.907 kb on + strand, within Xcc-8004.2038.1 at 1955.908 kb on - strand, within Xcc-8004.2038.1 at 1955.908 kb on - strand, within Xcc-8004.2038.1 at 1955.908 kb on - strand, within Xcc-8004.2038.1 at 1955.908 kb on - strand, within Xcc-8004.2038.1 at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.042 kb on - strand at 1956.042 kb on - strand at 1956.042 kb on - strand at 1956.042 kb on - strand at 1956.042 kb on - strand at 1956.142 kb on - strand at 1956.172 kb on + strand at 1956.172 kb on + strand at 1956.173 kb on - strand at 1956.173 kb on - strand at 1956.173 kb on - strand at 1956.195 kb on + strand at 1956.195 kb on + strand at 1956.195 kb on + strand at 1956.196 kb on - strand at 1956.196 kb on - strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.213 kb on + strand at 1956.213 kb on + strand at 1956.213 kb on + strand at 1956.214 kb on - strand at 1956.219 kb on + strand at 1956.219 kb on + strand at 1956.219 kb on + strand at 1956.220 kb on - strand at 1956.220 kb on - strand at 1956.220 kb on - strand at 1956.220 kb on - strand at 1956.220 kb on - strand at 1956.255 kb on + strand, within Xcc-8004.2039.1 at 1956.255 kb on + strand, within Xcc-8004.2039.1 at 1956.255 kb on + strand, within Xcc-8004.2039.1 at 1956.256 kb on - strand, within Xcc-8004.2039.1 at 1956.256 kb on - strand, within Xcc-8004.2039.1 at 1956.256 kb on - strand, within Xcc-8004.2039.1 at 1956.436 kb on + strand, within Xcc-8004.2039.1 at 1956.436 kb on + strand, within Xcc-8004.2039.1 at 1956.436 kb on + strand, within Xcc-8004.2039.1 at 1956.436 kb on + strand, within Xcc-8004.2039.1 at 1956.436 kb on + strand, within Xcc-8004.2039.1 at 1956.436 kb on + strand, within Xcc-8004.2039.1 at 1956.437 kb on - strand, within Xcc-8004.2039.1 at 1956.437 kb on - strand, within Xcc-8004.2039.1 at 1956.437 kb on - strand, within Xcc-8004.2039.1 at 1956.437 kb on - strand, within Xcc-8004.2039.1 at 1956.437 kb on - strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.756 kb on + strand, within Xcc-8004.2039.1 at 1956.828 kb on + strand, within Xcc-8004.2039.1 at 1956.828 kb on + strand, within Xcc-8004.2039.1 at 1956.828 kb on + strand, within Xcc-8004.2039.1 at 1956.828 kb on + strand, within Xcc-8004.2039.1 at 1956.828 kb on + strand, within Xcc-8004.2039.1 at 1956.829 kb on - strand, within Xcc-8004.2039.1 at 1956.829 kb on - strand, within Xcc-8004.2039.1 at 1956.829 kb on - strand, within Xcc-8004.2039.1 at 1956.829 kb on - strand, within Xcc-8004.2039.1 at 1956.829 kb on - strand, within Xcc-8004.2039.1 at 1956.829 kb on - strand, within Xcc-8004.2039.1 at 1956.890 kb on + strand, within Xcc-8004.2039.1 at 1956.890 kb on + strand, within Xcc-8004.2039.1 at 1956.891 kb on - strand, within Xcc-8004.2039.1 at 1956.891 kb on - strand, within Xcc-8004.2039.1 at 1956.891 kb on - strand, within Xcc-8004.2039.1 at 1956.906 kb on + strand, within Xcc-8004.2039.1 at 1956.907 kb on - strand, within Xcc-8004.2039.1 at 1956.907 kb on - strand, within Xcc-8004.2039.1 at 1956.907 kb on - strand, within Xcc-8004.2039.1 at 1956.946 kb on - strand, within Xcc-8004.2039.1 at 1956.946 kb on - strand, within Xcc-8004.2039.1 at 1956.946 kb on - strand, within Xcc-8004.2039.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,954,871 + Xcc-8004.2034.1 0.82 +0.9 1,954,872 - Xcc-8004.2034.1 0.82 -0.9 1,954,872 - Xcc-8004.2034.1 0.82 -1.9 1,954,946 + Xcc-8004.2034.1 0.86 +1.0 1,954,946 + Xcc-8004.2034.1 0.86 -1.0 1,954,947 - Xcc-8004.2034.1 0.86 -0.6 1,954,947 - Xcc-8004.2034.1 0.86 +0.9 1,954,947 - Xcc-8004.2034.1 0.86 -2.6 1,954,947 - Xcc-8004.2034.1 0.86 +0.1 1,955,150 + -0.5 1,955,150 + +0.8 1,955,150 + +0.1 1,955,150 + +1.2 1,955,150 + -0.3 1,955,150 + -1.8 1,955,151 - +1.3 1,955,151 - +1.3 1,955,151 - -2.0 1,955,151 - +0.5 1,955,151 - +0.9 1,955,151 - +1.0 1,955,151 - -0.3 1,955,151 - -1.3 1,955,151 - +1.9 1,955,151 - -0.3 1,955,411 + +1.0 1,955,411 + +0.2 1,955,411 + +0.4 1,955,411 + -2.2 1,955,411 + +1.2 1,955,411 + +0.5 1,955,411 + -1.6 1,955,412 - -2.2 1,955,412 - -0.8 1,955,499 + -0.5 1,955,500 - -0.6 1,955,527 + -1.1 1,955,527 + -1.5 1,955,528 - +0.9 1,955,625 + -0.9 1,955,665 + -0.5 1,955,665 + -0.2 1,955,665 + -0.2 1,955,665 + +0.4 1,955,665 + -0.4 1,955,666 - -0.9 1,955,666 - +0.6 1,955,675 + -1.5 1,955,676 - -1.6 1,955,676 - -1.0 1,955,772 + -0.9 1,955,772 + -1.2 1,955,772 + -0.1 1,955,772 + +0.9 1,955,773 - +0.5 1,955,773 - +0.8 1,955,773 - +2.0 1,955,773 - +0.6 1,955,820 + -1.3 1,955,820 + +2.3 1,955,883 + Xcc-8004.2038.1 0.30 +1.0 1,955,883 + Xcc-8004.2038.1 0.30 -0.3 1,955,883 + Xcc-8004.2038.1 0.30 +0.3 1,955,883 + Xcc-8004.2038.1 0.30 +0.1 1,955,883 + Xcc-8004.2038.1 0.30 -0.4 1,955,883 + Xcc-8004.2038.1 0.30 -2.5 1,955,883 + Xcc-8004.2038.1 0.30 +0.9 1,955,883 + Xcc-8004.2038.1 0.30 +1.1 1,955,883 + Xcc-8004.2038.1 0.30 -0.7 1,955,883 + Xcc-8004.2038.1 0.30 -0.3 1,955,883 + Xcc-8004.2038.1 0.30 +0.1 1,955,883 + Xcc-8004.2038.1 0.30 +2.6 1,955,883 + Xcc-8004.2038.1 0.30 +1.7 1,955,883 + Xcc-8004.2038.1 0.30 -1.0 1,955,884 - Xcc-8004.2038.1 0.30 -0.9 1,955,884 - Xcc-8004.2038.1 0.30 +0.1 1,955,884 - Xcc-8004.2038.1 0.30 +1.0 1,955,884 - Xcc-8004.2038.1 0.30 +1.8 1,955,884 - Xcc-8004.2038.1 0.30 +0.4 1,955,884 - Xcc-8004.2038.1 0.30 +0.6 1,955,884 - Xcc-8004.2038.1 0.30 -0.5 1,955,884 - Xcc-8004.2038.1 0.30 +0.7 1,955,907 + Xcc-8004.2038.1 0.40 -0.3 1,955,908 - Xcc-8004.2038.1 0.40 -0.2 1,955,908 - Xcc-8004.2038.1 0.40 +0.4 1,955,908 - Xcc-8004.2038.1 0.40 -0.4 1,955,908 - Xcc-8004.2038.1 0.40 +0.4 1,956,041 + +0.2 1,956,041 + +0.1 1,956,041 + +0.0 1,956,041 + -1.9 1,956,041 + +0.9 1,956,041 + -0.6 1,956,041 + -1.9 1,956,041 + -0.2 1,956,042 - +0.4 1,956,042 - +0.1 1,956,042 - +1.1 1,956,042 - -1.2 1,956,042 - -0.8 1,956,142 - -1.1 1,956,172 + +0.6 1,956,172 + +0.0 1,956,173 - -2.6 1,956,173 - -1.4 1,956,173 - +0.5 1,956,195 + +0.6 1,956,195 + +1.5 1,956,195 + -0.2 1,956,196 - -0.3 1,956,196 - -0.8 1,956,210 + -0.1 1,956,210 + -0.7 1,956,210 + -0.4 1,956,210 + -0.5 1,956,210 + +0.6 1,956,210 + -0.4 1,956,210 + -0.3 1,956,210 + +0.4 1,956,210 + +1.7 1,956,210 + -0.4 1,956,210 + -0.0 1,956,210 + -0.3 1,956,210 + -1.8 1,956,210 + +0.5 1,956,211 - -0.9 1,956,211 - +0.6 1,956,211 - +1.1 1,956,211 - +0.1 1,956,211 - +2.1 1,956,211 - +0.6 1,956,211 - +0.3 1,956,211 - -0.0 1,956,211 - -0.3 1,956,211 - -0.5 1,956,211 - +0.1 1,956,211 - +0.5 1,956,211 - -0.5 1,956,213 + -0.0 1,956,213 + +0.1 1,956,213 + -0.1 1,956,214 - -1.2 1,956,219 + -0.4 1,956,219 + +0.1 1,956,219 + -0.8 1,956,220 - -1.7 1,956,220 - -0.3 1,956,220 - +0.7 1,956,220 - +1.2 1,956,220 - +0.7 1,956,255 + Xcc-8004.2039.1 0.10 +0.6 1,956,255 + Xcc-8004.2039.1 0.10 -0.5 1,956,255 + Xcc-8004.2039.1 0.10 +0.2 1,956,256 - Xcc-8004.2039.1 0.10 +0.1 1,956,256 - Xcc-8004.2039.1 0.10 +0.0 1,956,256 - Xcc-8004.2039.1 0.10 -1.8 1,956,436 + Xcc-8004.2039.1 0.21 -0.7 1,956,436 + Xcc-8004.2039.1 0.21 -0.2 1,956,436 + Xcc-8004.2039.1 0.21 -1.4 1,956,436 + Xcc-8004.2039.1 0.21 +0.2 1,956,436 + Xcc-8004.2039.1 0.21 -0.4 1,956,436 + Xcc-8004.2039.1 0.21 -0.5 1,956,437 - Xcc-8004.2039.1 0.21 -0.3 1,956,437 - Xcc-8004.2039.1 0.21 -1.7 1,956,437 - Xcc-8004.2039.1 0.21 +0.5 1,956,437 - Xcc-8004.2039.1 0.21 -0.3 1,956,437 - Xcc-8004.2039.1 0.21 -0.0 1,956,696 + Xcc-8004.2039.1 0.36 +0.6 1,956,696 + Xcc-8004.2039.1 0.36 +0.7 1,956,696 + Xcc-8004.2039.1 0.36 -1.4 1,956,696 + Xcc-8004.2039.1 0.36 +1.8 1,956,696 + Xcc-8004.2039.1 0.36 -0.5 1,956,696 + Xcc-8004.2039.1 0.36 -1.6 1,956,696 + Xcc-8004.2039.1 0.36 -0.2 1,956,696 + Xcc-8004.2039.1 0.36 -1.2 1,956,696 + Xcc-8004.2039.1 0.36 +2.4 1,956,696 + Xcc-8004.2039.1 0.36 -1.6 1,956,697 - Xcc-8004.2039.1 0.36 +0.6 1,956,697 - Xcc-8004.2039.1 0.36 +0.2 1,956,697 - Xcc-8004.2039.1 0.36 -1.6 1,956,697 - Xcc-8004.2039.1 0.36 -0.4 1,956,697 - Xcc-8004.2039.1 0.36 -1.2 1,956,697 - Xcc-8004.2039.1 0.36 -1.6 1,956,697 - Xcc-8004.2039.1 0.36 -0.5 1,956,756 + Xcc-8004.2039.1 0.40 +0.0 1,956,828 + Xcc-8004.2039.1 0.44 +0.2 1,956,828 + Xcc-8004.2039.1 0.44 -1.1 1,956,828 + Xcc-8004.2039.1 0.44 -1.3 1,956,828 + Xcc-8004.2039.1 0.44 +0.6 1,956,828 + Xcc-8004.2039.1 0.44 +0.5 1,956,829 - Xcc-8004.2039.1 0.44 +1.1 1,956,829 - Xcc-8004.2039.1 0.44 -0.9 1,956,829 - Xcc-8004.2039.1 0.44 -0.6 1,956,829 - Xcc-8004.2039.1 0.44 -0.2 1,956,829 - Xcc-8004.2039.1 0.44 -0.1 1,956,829 - Xcc-8004.2039.1 0.44 +0.2 1,956,890 + Xcc-8004.2039.1 0.48 -0.6 1,956,890 + Xcc-8004.2039.1 0.48 +0.1 1,956,891 - Xcc-8004.2039.1 0.48 -1.3 1,956,891 - Xcc-8004.2039.1 0.48 +0.7 1,956,891 - Xcc-8004.2039.1 0.48 -2.0 1,956,906 + Xcc-8004.2039.1 0.49 +0.4 1,956,907 - Xcc-8004.2039.1 0.49 -1.7 1,956,907 - Xcc-8004.2039.1 0.49 +0.7 1,956,907 - Xcc-8004.2039.1 0.49 +0.4 1,956,946 - Xcc-8004.2039.1 0.51 -0.2 1,956,946 - Xcc-8004.2039.1 0.51 +0.9 1,956,946 - Xcc-8004.2039.1 0.51 +0.3
Or see this region's nucleotide sequence