Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1851.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1849.1 and Xcc-8004.1850.1 overlap by 4 nucleotidesXcc-8004.1850.1 and Xcc-8004.1851.1 are separated by 303 nucleotidesXcc-8004.1851.1 and Xcc-8004.1852.1 are separated by 316 nucleotides Xcc-8004.1849.1: Xcc-8004.1849.1 - Beta-lactamase (EC 3.5.2.6), at 1,783,988 to 1,785,346 Xcc-8004.1849.1 Xcc-8004.1850.1: Xcc-8004.1850.1 - hypothetical protein, at 1,785,343 to 1,785,615 Xcc-8004.1850.1 Xcc-8004.1851.1: Xcc-8004.1851.1 - Cation:proton antiporter, at 1,785,919 to 1,787,184 Xcc-8004.1851.1 Xcc-8004.1852.1: Xcc-8004.1852.1 - ABC transporter ATP-binding protein, at 1,787,501 to 1,789,333 Xcc-8004.1852.1 Position (kb) 1785 1786 1787 1788Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1785.305 kb on + strandat 1785.317 kb on + strandat 1785.318 kb on - strandat 1785.318 kb on - strandat 1785.332 kb on - strandat 1785.883 kb on + strandat 1785.883 kb on + strandat 1785.884 kb on - strandat 1785.943 kb on + strandat 1785.944 kb on - strandat 1786.010 kb on + strandat 1786.010 kb on + strandat 1786.010 kb on + strandat 1786.010 kb on + strandat 1786.010 kb on + strandat 1786.011 kb on - strandat 1786.011 kb on - strandat 1786.011 kb on - strandat 1786.011 kb on - strandat 1786.132 kb on + strand, within Xcc-8004.1851.1at 1786.132 kb on + strand, within Xcc-8004.1851.1at 1786.132 kb on + strand, within Xcc-8004.1851.1at 1786.132 kb on + strand, within Xcc-8004.1851.1at 1786.132 kb on + strand, within Xcc-8004.1851.1at 1786.132 kb on + strand, within Xcc-8004.1851.1at 1786.133 kb on - strand, within Xcc-8004.1851.1at 1786.133 kb on - strand, within Xcc-8004.1851.1at 1786.133 kb on - strand, within Xcc-8004.1851.1at 1786.136 kb on + strand, within Xcc-8004.1851.1at 1786.136 kb on + strand, within Xcc-8004.1851.1at 1786.136 kb on + strand, within Xcc-8004.1851.1at 1786.136 kb on + strand, within Xcc-8004.1851.1at 1786.137 kb on - strand, within Xcc-8004.1851.1at 1786.137 kb on - strand, within Xcc-8004.1851.1at 1786.137 kb on - strand, within Xcc-8004.1851.1at 1786.162 kb on + strand, within Xcc-8004.1851.1at 1786.162 kb on + strand, within Xcc-8004.1851.1at 1786.162 kb on + strand, within Xcc-8004.1851.1at 1786.162 kb on + strand, within Xcc-8004.1851.1at 1786.162 kb on + strand, within Xcc-8004.1851.1at 1786.162 kb on + strand, within Xcc-8004.1851.1at 1786.163 kb on - strand, within Xcc-8004.1851.1at 1786.163 kb on - strand, within Xcc-8004.1851.1at 1786.163 kb on - strand, within Xcc-8004.1851.1at 1786.163 kb on - strand, within Xcc-8004.1851.1at 1786.163 kb on - strand, within Xcc-8004.1851.1at 1786.528 kb on + strand, within Xcc-8004.1851.1at 1786.528 kb on + strand, within Xcc-8004.1851.1at 1786.609 kb on + strand, within Xcc-8004.1851.1at 1786.609 kb on + strand, within Xcc-8004.1851.1at 1786.609 kb on + strand, within Xcc-8004.1851.1at 1786.610 kb on - strand, within Xcc-8004.1851.1at 1786.610 kb on - strand, within Xcc-8004.1851.1at 1787.118 kb on - strandat 1787.293 kb on + strandat 1787.591 kb on + strandat 1787.591 kb on + strandat 1787.591 kb on + strandat 1787.640 kb on + strandat 1787.641 kb on - strandat 1787.804 kb on - strand, within Xcc-8004.1852.1at 1787.870 kb on + strand, within Xcc-8004.1852.1at 1787.870 kb on + strand, within Xcc-8004.1852.1at 1787.870 kb on + strand, within Xcc-8004.1852.1at 1787.870 kb on + strand, within Xcc-8004.1852.1at 1787.871 kb on - strand, within Xcc-8004.1852.1at 1787.993 kb on + strand, within Xcc-8004.1852.1at 1787.994 kb on - strand, within Xcc-8004.1852.1at 1787.994 kb on - strand, within Xcc-8004.1852.1at 1788.005 kb on + strand, within Xcc-8004.1852.1at 1788.006 kb on - strand, within Xcc-8004.1852.1at 1788.083 kb on + strand, within Xcc-8004.1852.1at 1788.083 kb on + strand, within Xcc-8004.1852.1at 1788.083 kb on + strand, within Xcc-8004.1852.1at 1788.083 kb on + strand, within Xcc-8004.1852.1at 1788.083 kb on + strand, within Xcc-8004.1852.1at 1788.083 kb on + strand, within Xcc-8004.1852.1at 1788.083 kb on + strand, within Xcc-8004.1852.1at 1788.083 kb on + strand, within Xcc-8004.1852.1at 1788.083 kb on + strand, within Xcc-8004.1852.1at 1788.083 kb on + strand, within Xcc-8004.1852.1at 1788.083 kb on + strand, within Xcc-8004.1852.1at 1788.083 kb on + strand, within Xcc-8004.1852.1at 1788.084 kb on - strand, within Xcc-8004.1852.1at 1788.084 kb on - strand, within Xcc-8004.1852.1at 1788.084 kb on - strand, within Xcc-8004.1852.1at 1788.084 kb on - strand, within Xcc-8004.1852.1at 1788.084 kb on - strand, within Xcc-8004.1852.1at 1788.084 kb on - strand, within Xcc-8004.1852.1at 1788.084 kb on - strand, within Xcc-8004.1852.1at 1788.084 kb on - strand, within Xcc-8004.1852.1at 1788.084 kb on - strand, within Xcc-8004.1852.1at 1788.084 kb on - strand, within Xcc-8004.1852.1at 1788.183 kb on - strand, within Xcc-8004.1852.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
1,785,305 + -0.8
1,785,317 + -1.4
1,785,318 - +2.1
1,785,318 - +0.2
1,785,332 - -0.9
1,785,883 + -0.4
1,785,883 + -0.9
1,785,884 - -1.3
1,785,943 + +0.4
1,785,944 - -0.5
1,786,010 + -0.7
1,786,010 + +0.9
1,786,010 + +2.3
1,786,010 + -1.1
1,786,010 + +1.1
1,786,011 - +0.1
1,786,011 - +0.6
1,786,011 - -0.8
1,786,011 - -1.1
1,786,132 + Xcc-8004.1851.1 0.17 +0.3
1,786,132 + Xcc-8004.1851.1 0.17 -2.8
1,786,132 + Xcc-8004.1851.1 0.17 -0.7
1,786,132 + Xcc-8004.1851.1 0.17 -1.4
1,786,132 + Xcc-8004.1851.1 0.17 -1.3
1,786,132 + Xcc-8004.1851.1 0.17 -0.7
1,786,133 - Xcc-8004.1851.1 0.17 -2.5
1,786,133 - Xcc-8004.1851.1 0.17 -0.2
1,786,133 - Xcc-8004.1851.1 0.17 -0.3
1,786,136 + Xcc-8004.1851.1 0.17 +0.1
1,786,136 + Xcc-8004.1851.1 0.17 -0.1
1,786,136 + Xcc-8004.1851.1 0.17 -1.6
1,786,136 + Xcc-8004.1851.1 0.17 -2.1
1,786,137 - Xcc-8004.1851.1 0.17 -0.4
1,786,137 - Xcc-8004.1851.1 0.17 -1.5
1,786,137 - Xcc-8004.1851.1 0.17 +0.6
1,786,162 + Xcc-8004.1851.1 0.19 -1.1
1,786,162 + Xcc-8004.1851.1 0.19 +1.8
1,786,162 + Xcc-8004.1851.1 0.19 +0.5
1,786,162 + Xcc-8004.1851.1 0.19 -1.8
1,786,162 + Xcc-8004.1851.1 0.19 -0.2
1,786,162 + Xcc-8004.1851.1 0.19 -0.5
1,786,163 - Xcc-8004.1851.1 0.19 +0.7
1,786,163 - Xcc-8004.1851.1 0.19 -0.5
1,786,163 - Xcc-8004.1851.1 0.19 -1.1
1,786,163 - Xcc-8004.1851.1 0.19 +0.1
1,786,163 - Xcc-8004.1851.1 0.19 +1.1
1,786,528 + Xcc-8004.1851.1 0.48 -1.6
1,786,528 + Xcc-8004.1851.1 0.48 +1.3
1,786,609 + Xcc-8004.1851.1 0.55 +0.5
1,786,609 + Xcc-8004.1851.1 0.55 -0.0
1,786,609 + Xcc-8004.1851.1 0.55 +1.0
1,786,610 - Xcc-8004.1851.1 0.55 -2.9
1,786,610 - Xcc-8004.1851.1 0.55 -0.4
1,787,118 - -0.3
1,787,293 + +0.4
1,787,591 + -0.4
1,787,591 + -0.3
1,787,591 + +1.8
1,787,640 + -0.4
1,787,641 - -0.7
1,787,804 - Xcc-8004.1852.1 0.17 -0.1
1,787,870 + Xcc-8004.1852.1 0.20 -0.9
1,787,870 + Xcc-8004.1852.1 0.20 -0.6
1,787,870 + Xcc-8004.1852.1 0.20 +1.5
1,787,870 + Xcc-8004.1852.1 0.20 +0.1
1,787,871 - Xcc-8004.1852.1 0.20 -1.6
1,787,993 + Xcc-8004.1852.1 0.27 -0.1
1,787,994 - Xcc-8004.1852.1 0.27 -1.4
1,787,994 - Xcc-8004.1852.1 0.27 +0.7
1,788,005 + Xcc-8004.1852.1 0.27 +0.6
1,788,006 - Xcc-8004.1852.1 0.28 -0.3
1,788,083 + Xcc-8004.1852.1 0.32 +0.6
1,788,083 + Xcc-8004.1852.1 0.32 -1.1
1,788,083 + Xcc-8004.1852.1 0.32 +0.5
1,788,083 + Xcc-8004.1852.1 0.32 -1.9
1,788,083 + Xcc-8004.1852.1 0.32 +1.2
1,788,083 + Xcc-8004.1852.1 0.32 -0.4
1,788,083 + Xcc-8004.1852.1 0.32 +1.2
1,788,083 + Xcc-8004.1852.1 0.32 -1.0
1,788,083 + Xcc-8004.1852.1 0.32 -0.7
1,788,083 + Xcc-8004.1852.1 0.32 +1.5
1,788,083 + Xcc-8004.1852.1 0.32 -1.3
1,788,083 + Xcc-8004.1852.1 0.32 +1.5
1,788,084 - Xcc-8004.1852.1 0.32 +1.2
1,788,084 - Xcc-8004.1852.1 0.32 -1.4
1,788,084 - Xcc-8004.1852.1 0.32 +1.9
1,788,084 - Xcc-8004.1852.1 0.32 +0.2
1,788,084 - Xcc-8004.1852.1 0.32 -0.4
1,788,084 - Xcc-8004.1852.1 0.32 -1.2
1,788,084 - Xcc-8004.1852.1 0.32 -0.5
1,788,084 - Xcc-8004.1852.1 0.32 +1.1
1,788,084 - Xcc-8004.1852.1 0.32 -1.5
1,788,084 - Xcc-8004.1852.1 0.32 -0.3
1,788,183 - Xcc-8004.1852.1 0.37 -2.1

Or see this region's nucleotide sequence