Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06620 and PGA1_c06630 are separated by 104 nucleotides PGA1_c06630 and PGA1_c06640 are separated by 177 nucleotides PGA1_c06640 and PGA1_c06650 are separated by 178 nucleotides
PGA1_c06620: PGA1_c06620 - putative FAD-dependent hydroxylase, at 679,223 to 680,419
_c06620
PGA1_c06630: PGA1_c06630 - hypothetical protein, at 680,524 to 680,769
_c06630
PGA1_c06640: PGA1_c06640 - putative pyrimidine 5'-nucleotidase, at 680,947 to 681,588
_c06640
PGA1_c06650: PGA1_c06650 - transcriptional regulator, GntR family, at 681,767 to 682,420
_c06650
Position (kb) 680
681 Strain fitness (log2 ratio) -2
-1
0
1 at 680.451 kb on + strand at 680.469 kb on - strand at 680.565 kb on - strand, within PGA1_c06630 at 680.575 kb on - strand, within PGA1_c06630 at 680.624 kb on + strand, within PGA1_c06630 at 680.732 kb on + strand, within PGA1_c06630 at 680.732 kb on + strand, within PGA1_c06630 at 680.732 kb on + strand, within PGA1_c06630 at 680.740 kb on - strand, within PGA1_c06630 at 680.740 kb on - strand, within PGA1_c06630 at 680.779 kb on + strand at 680.787 kb on - strand at 680.787 kb on - strand at 680.788 kb on - strand at 680.803 kb on + strand at 680.827 kb on - strand at 680.945 kb on + strand at 680.953 kb on - strand at 680.967 kb on + strand at 681.034 kb on + strand, within PGA1_c06640 at 681.085 kb on - strand, within PGA1_c06640 at 681.085 kb on - strand, within PGA1_c06640 at 681.101 kb on + strand, within PGA1_c06640 at 681.201 kb on + strand, within PGA1_c06640 at 681.207 kb on - strand, within PGA1_c06640 at 681.209 kb on - strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.226 kb on - strand, within PGA1_c06640 at 681.226 kb on - strand, within PGA1_c06640 at 681.281 kb on + strand, within PGA1_c06640 at 681.281 kb on + strand, within PGA1_c06640 at 681.289 kb on - strand, within PGA1_c06640 at 681.289 kb on - strand, within PGA1_c06640 at 681.381 kb on + strand, within PGA1_c06640 at 681.445 kb on + strand, within PGA1_c06640 at 681.453 kb on - strand, within PGA1_c06640 at 681.522 kb on + strand, within PGA1_c06640 at 681.584 kb on + strand at 681.598 kb on - strand at 681.611 kb on - strand at 681.611 kb on - strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.669 kb on + strand at 681.691 kb on - strand at 681.691 kb on - strand at 681.699 kb on - strand at 681.710 kb on - strand at 681.730 kb on + strand at 681.736 kb on - strand at 681.760 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 680,451 + -1.2 680,469 - -1.3 680,565 - PGA1_c06630 0.17 +0.9 680,575 - PGA1_c06630 0.21 +0.4 680,624 + PGA1_c06630 0.41 -2.5 680,732 + PGA1_c06630 0.85 -0.4 680,732 + PGA1_c06630 0.85 +0.5 680,732 + PGA1_c06630 0.85 -0.3 680,740 - PGA1_c06630 0.88 +0.2 680,740 - PGA1_c06630 0.88 -0.9 680,779 + +0.5 680,787 - +0.9 680,787 - -1.3 680,788 - -0.1 680,803 + -0.5 680,827 - +0.3 680,945 + +0.2 680,953 - -0.4 680,967 + +0.6 681,034 + PGA1_c06640 0.14 +0.2 681,085 - PGA1_c06640 0.21 -0.1 681,085 - PGA1_c06640 0.21 -0.4 681,101 + PGA1_c06640 0.24 -0.4 681,201 + PGA1_c06640 0.40 -0.4 681,207 - PGA1_c06640 0.40 +0.5 681,209 - PGA1_c06640 0.41 +1.4 681,218 + PGA1_c06640 0.42 -0.2 681,218 + PGA1_c06640 0.42 +0.5 681,218 + PGA1_c06640 0.42 -0.2 681,218 + PGA1_c06640 0.42 +0.2 681,226 - PGA1_c06640 0.43 -0.3 681,226 - PGA1_c06640 0.43 +0.2 681,281 + PGA1_c06640 0.52 -0.7 681,281 + PGA1_c06640 0.52 -0.2 681,289 - PGA1_c06640 0.53 -0.7 681,289 - PGA1_c06640 0.53 +1.1 681,381 + PGA1_c06640 0.68 +0.4 681,445 + PGA1_c06640 0.78 +0.4 681,453 - PGA1_c06640 0.79 +0.5 681,522 + PGA1_c06640 0.90 -1.7 681,584 + -0.8 681,598 - +1.3 681,611 - -0.1 681,611 - +0.0 681,637 + -0.1 681,637 + +0.3 681,637 + +0.1 681,637 + -0.1 681,637 + -0.1 681,637 + +0.8 681,645 - +0.2 681,645 - -0.0 681,645 - +0.2 681,645 - +0.8 681,645 - +0.3 681,645 - -2.2 681,669 + +0.4 681,691 - -0.1 681,691 - -0.4 681,699 - +0.9 681,710 - +0.9 681,730 + -0.1 681,736 - +0.0 681,760 - +1.1
Or see this region's nucleotide sequence