Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02200 and PGA1_262p02210 are separated by 204 nucleotides PGA1_262p02210 and PGA1_262p02220 overlap by 7 nucleotides
PGA1_262p02200: PGA1_262p02200 - molybdenum import ATP-binding protein ModC, at 237,198 to 238,289
_262p02200
PGA1_262p02210: PGA1_262p02210 - FAD dependent oxidoreductase, at 238,494 to 239,795
_262p02210
PGA1_262p02220: PGA1_262p02220 - ABC transporter, periplasmic solute-binding protein, at 239,789 to 240,859
_262p02220
Position (kb) 238
239
240 Strain fitness (log2 ratio) -1
0
1 at 237.556 kb on + strand, within PGA1_262p02200 at 237.586 kb on - strand, within PGA1_262p02200 at 237.590 kb on + strand, within PGA1_262p02200 at 237.635 kb on + strand, within PGA1_262p02200 at 237.643 kb on - strand, within PGA1_262p02200 at 237.913 kb on + strand, within PGA1_262p02200 at 237.921 kb on - strand, within PGA1_262p02200 at 238.206 kb on - strand at 238.388 kb on + strand at 238.404 kb on + strand at 238.412 kb on - strand at 238.481 kb on + strand at 238.675 kb on + strand, within PGA1_262p02210 at 238.722 kb on + strand, within PGA1_262p02210 at 238.766 kb on + strand, within PGA1_262p02210 at 239.150 kb on + strand, within PGA1_262p02210 at 239.168 kb on - strand, within PGA1_262p02210 at 239.651 kb on - strand, within PGA1_262p02210 at 239.716 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 237,556 + PGA1_262p02200 0.33 -0.8 237,586 - PGA1_262p02200 0.36 +0.7 237,590 + PGA1_262p02200 0.36 +1.4 237,635 + PGA1_262p02200 0.40 +0.4 237,643 - PGA1_262p02200 0.41 -0.1 237,913 + PGA1_262p02200 0.65 -0.5 237,921 - PGA1_262p02200 0.66 -0.6 238,206 - +0.5 238,388 + +0.9 238,404 + -1.5 238,412 - +0.4 238,481 + -0.1 238,675 + PGA1_262p02210 0.14 -1.3 238,722 + PGA1_262p02210 0.18 +0.0 238,766 + PGA1_262p02210 0.21 -0.8 239,150 + PGA1_262p02210 0.50 -0.3 239,168 - PGA1_262p02210 0.52 -1.1 239,651 - PGA1_262p02210 0.89 +0.1 239,716 - -0.2
Or see this region's nucleotide sequence