Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS25500

Experiment: Cephalothin 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS25495 and BWI76_RS25500 are separated by 70 nucleotidesBWI76_RS25500 and BWI76_RS25505 are separated by 305 nucleotides BWI76_RS25495: BWI76_RS25495 - rod shape-determining protein MreC, at 5,299,447 to 5,300,433 _RS25495 BWI76_RS25500: BWI76_RS25500 - rod shape-determining protein, at 5,300,504 to 5,301,547 _RS25500 BWI76_RS25505: BWI76_RS25505 - RNase E specificity factor CsrD, at 5,301,853 to 5,303,793 _RS25505 Position (kb) 5300 5301 5302Strain fitness (log2 ratio) -1 0 1 2 3 4at 5301.849 kb on - strandat 5302.026 kb on - strandat 5302.031 kb on - strandat 5302.148 kb on - strand, within BWI76_RS25505at 5302.267 kb on + strand, within BWI76_RS25505

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml
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5,301,849 - -0.9
5,302,026 - +2.2
5,302,031 - +3.8
5,302,148 - BWI76_RS25505 0.15 +1.9
5,302,267 + BWI76_RS25505 0.21 +1.0

Or see this region's nucleotide sequence