Experiment: Cephalothin 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24205 and BWI76_RS24210 are separated by 10 nucleotides BWI76_RS24210 and BWI76_RS24215 are separated by 79 nucleotides
BWI76_RS24205: BWI76_RS24205 - cystathionine beta-synthase, at 5,045,495 to 5,046,865
_RS24205
BWI76_RS24210: BWI76_RS24210 - cystathionine gamma-lyase, at 5,046,876 to 5,048,021
_RS24210
BWI76_RS24215: BWI76_RS24215 - LysR family transcriptional regulator, at 5,048,101 to 5,049,000
_RS24215
Position (kb)
5046
5047
5048
5049 Strain fitness (log2 ratio)
-2
-1
0
1 at 5046.084 kb on - strand, within BWI76_RS24205 at 5046.289 kb on + strand, within BWI76_RS24205 at 5046.307 kb on + strand, within BWI76_RS24205 at 5046.328 kb on + strand, within BWI76_RS24205 at 5046.655 kb on + strand, within BWI76_RS24205 at 5046.720 kb on - strand, within BWI76_RS24205 at 5046.965 kb on - strand at 5047.117 kb on + strand, within BWI76_RS24210 at 5047.185 kb on - strand, within BWI76_RS24210 at 5047.195 kb on - strand, within BWI76_RS24210 at 5047.503 kb on - strand, within BWI76_RS24210 at 5047.596 kb on - strand, within BWI76_RS24210 at 5047.695 kb on + strand, within BWI76_RS24210 at 5047.816 kb on + strand, within BWI76_RS24210 at 5047.850 kb on + strand, within BWI76_RS24210 at 5048.010 kb on - strand at 5048.098 kb on + strand at 5048.098 kb on + strand at 5048.219 kb on + strand, within BWI76_RS24215 at 5048.249 kb on - strand, within BWI76_RS24215 at 5048.352 kb on - strand, within BWI76_RS24215 at 5048.645 kb on + strand, within BWI76_RS24215 at 5048.751 kb on + strand, within BWI76_RS24215 at 5048.872 kb on - strand, within BWI76_RS24215 at 5049.017 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml remove 5,046,084 - BWI76_RS24205 0.43 +0.1 5,046,289 + BWI76_RS24205 0.58 -0.3 5,046,307 + BWI76_RS24205 0.59 -2.0 5,046,328 + BWI76_RS24205 0.61 -0.5 5,046,655 + BWI76_RS24205 0.85 +0.7 5,046,720 - BWI76_RS24205 0.89 -0.1 5,046,965 - -0.0 5,047,117 + BWI76_RS24210 0.21 +0.2 5,047,185 - BWI76_RS24210 0.27 +0.1 5,047,195 - BWI76_RS24210 0.28 +0.2 5,047,503 - BWI76_RS24210 0.55 +0.1 5,047,596 - BWI76_RS24210 0.63 +0.8 5,047,695 + BWI76_RS24210 0.71 -0.4 5,047,816 + BWI76_RS24210 0.82 +0.6 5,047,850 + BWI76_RS24210 0.85 +1.5 5,048,010 - -0.1 5,048,098 + +0.8 5,048,098 + +0.0 5,048,219 + BWI76_RS24215 0.13 -0.2 5,048,249 - BWI76_RS24215 0.16 -0.0 5,048,352 - BWI76_RS24215 0.28 -0.2 5,048,645 + BWI76_RS24215 0.60 +1.4 5,048,751 + BWI76_RS24215 0.72 -0.1 5,048,872 - BWI76_RS24215 0.86 +0.1 5,049,017 - +0.3
Or see this region's nucleotide sequence