Experiment: Cephalothin 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22975 and BWI76_RS22980 are separated by 105 nucleotides BWI76_RS22980 and BWI76_RS22985 are separated by 211 nucleotides BWI76_RS22985 and BWI76_RS22990 are separated by 47 nucleotides BWI76_RS22990 and BWI76_RS22995 are separated by 44 nucleotides BWI76_RS22995 and BWI76_RS23000 are separated by 100 nucleotides
BWI76_RS22975: BWI76_RS22975 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 4,796,200 to 4,797,009
_RS22975
BWI76_RS22980: BWI76_RS22980 - murein transglycosylase A, at 4,797,115 to 4,798,212
_RS22980
BWI76_RS22985: BWI76_RS22985 - tRNA-Met, at 4,798,424 to 4,798,500
_RS22985
BWI76_RS22990: BWI76_RS22990 - tRNA-Met, at 4,798,548 to 4,798,624
_RS22990
BWI76_RS22995: BWI76_RS22995 - tRNA-Met, at 4,798,669 to 4,798,745
_RS22995
BWI76_RS23000: BWI76_RS23000 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 4,798,846 to 4,799,901
_RS23000
Position (kb)
4797
4798
4799 Strain fitness (log2 ratio)
-2
-1
0
1 at 4796.151 kb on + strand at 4796.421 kb on - strand, within BWI76_RS22975 at 4796.438 kb on + strand, within BWI76_RS22975 at 4796.649 kb on - strand, within BWI76_RS22975 at 4796.985 kb on + strand at 4797.213 kb on - strand at 4797.261 kb on + strand, within BWI76_RS22980 at 4797.261 kb on + strand, within BWI76_RS22980 at 4797.269 kb on - strand, within BWI76_RS22980 at 4797.285 kb on + strand, within BWI76_RS22980 at 4797.370 kb on + strand, within BWI76_RS22980 at 4797.424 kb on - strand, within BWI76_RS22980 at 4797.987 kb on - strand, within BWI76_RS22980 at 4797.989 kb on + strand, within BWI76_RS22980 at 4798.027 kb on - strand, within BWI76_RS22980 at 4798.112 kb on + strand at 4798.245 kb on - strand at 4799.001 kb on + strand, within BWI76_RS23000 at 4799.051 kb on - strand, within BWI76_RS23000
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml remove 4,796,151 + +0.3 4,796,421 - BWI76_RS22975 0.27 -1.5 4,796,438 + BWI76_RS22975 0.29 -0.5 4,796,649 - BWI76_RS22975 0.55 -1.6 4,796,985 + -0.7 4,797,213 - -0.5 4,797,261 + BWI76_RS22980 0.13 -1.1 4,797,261 + BWI76_RS22980 0.13 -2.4 4,797,269 - BWI76_RS22980 0.14 -1.1 4,797,285 + BWI76_RS22980 0.15 -0.7 4,797,370 + BWI76_RS22980 0.23 -1.6 4,797,424 - BWI76_RS22980 0.28 -1.1 4,797,987 - BWI76_RS22980 0.79 -0.8 4,797,989 + BWI76_RS22980 0.80 -1.2 4,798,027 - BWI76_RS22980 0.83 +0.1 4,798,112 + -0.8 4,798,245 - -0.9 4,799,001 + BWI76_RS23000 0.15 -0.2 4,799,051 - BWI76_RS23000 0.19 -0.3
Or see this region's nucleotide sequence