Experiment: Cephalothin 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22075 and BWI76_RS22080 are separated by 241 nucleotides BWI76_RS22080 and BWI76_RS22085 overlap by 11 nucleotides BWI76_RS22085 and BWI76_RS22090 are separated by 91 nucleotides BWI76_RS22090 and BWI76_RS22095 are separated by 131 nucleotides
BWI76_RS22075: BWI76_RS22075 - glycine betaine ABC transporter substrate-binding protein, at 4,608,752 to 4,609,747
_RS22075
BWI76_RS22080: BWI76_RS22080 - AzlC family protein, at 4,609,989 to 4,610,735
_RS22080
BWI76_RS22085: BWI76_RS22085 - L-valine transporter subunit YgaH, at 4,610,725 to 4,611,060
_RS22085
BWI76_RS22090: BWI76_RS22090 - transcriptional regulator, at 4,611,152 to 4,611,682
_RS22090
BWI76_RS22095: BWI76_RS22095 - multidrug export protein EmrA, at 4,611,814 to 4,612,986
_RS22095
Position (kb)
4610
4611
4612 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4609.757 kb on + strand at 4609.819 kb on - strand at 4609.839 kb on - strand at 4609.922 kb on - strand at 4609.924 kb on + strand at 4610.281 kb on - strand, within BWI76_RS22080 at 4610.350 kb on + strand, within BWI76_RS22080 at 4610.360 kb on - strand, within BWI76_RS22080 at 4610.433 kb on + strand, within BWI76_RS22080 at 4610.433 kb on + strand, within BWI76_RS22080 at 4610.523 kb on + strand, within BWI76_RS22080 at 4610.538 kb on - strand, within BWI76_RS22080 at 4610.557 kb on - strand, within BWI76_RS22080 at 4610.663 kb on + strand at 4610.697 kb on + strand at 4610.699 kb on - strand at 4610.710 kb on - strand at 4610.737 kb on + strand at 4610.964 kb on - strand, within BWI76_RS22085 at 4611.016 kb on + strand, within BWI76_RS22085 at 4611.016 kb on + strand, within BWI76_RS22085 at 4611.504 kb on + strand, within BWI76_RS22090 at 4611.570 kb on + strand, within BWI76_RS22090 at 4611.615 kb on + strand, within BWI76_RS22090 at 4611.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml remove 4,609,757 + -1.5 4,609,819 - -0.3 4,609,839 - -1.7 4,609,922 - +0.7 4,609,924 + -1.4 4,610,281 - BWI76_RS22080 0.39 +0.9 4,610,350 + BWI76_RS22080 0.48 -1.4 4,610,360 - BWI76_RS22080 0.50 +1.1 4,610,433 + BWI76_RS22080 0.59 -1.0 4,610,433 + BWI76_RS22080 0.59 -1.1 4,610,523 + BWI76_RS22080 0.71 -2.5 4,610,538 - BWI76_RS22080 0.73 -0.7 4,610,557 - BWI76_RS22080 0.76 +1.0 4,610,663 + -1.6 4,610,697 + -1.9 4,610,699 - +0.1 4,610,710 - +0.6 4,610,737 + -2.8 4,610,964 - BWI76_RS22085 0.71 -0.5 4,611,016 + BWI76_RS22085 0.87 -1.4 4,611,016 + BWI76_RS22085 0.87 -3.6 4,611,504 + BWI76_RS22090 0.66 +1.8 4,611,570 + BWI76_RS22090 0.79 +1.3 4,611,615 + BWI76_RS22090 0.87 +1.5 4,611,683 + +1.4
Or see this region's nucleotide sequence