Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11705

Experiment: Cephalothin 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11695 and BWI76_RS11700 are separated by 208 nucleotidesBWI76_RS11700 and BWI76_RS11705 are separated by 4 nucleotidesBWI76_RS11705 and BWI76_RS11710 are separated by 34 nucleotidesBWI76_RS11710 and BWI76_RS11715 are separated by 102 nucleotides BWI76_RS11695: BWI76_RS11695 - ATP-independent periplasmic protein-refolding chaperone, at 2,461,237 to 2,461,719 _RS11695 BWI76_RS11700: BWI76_RS11700 - hypothetical protein, at 2,461,928 to 2,462,470 _RS11700 BWI76_RS11705: BWI76_RS11705 - hypothetical protein, at 2,462,475 to 2,464,517 _RS11705 BWI76_RS11710: BWI76_RS11710 - nucleotide excision repair endonuclease, at 2,464,552 to 2,465,412 _RS11710 BWI76_RS11715: BWI76_RS11715 - NAD(+) synthetase, at 2,465,515 to 2,466,342 _RS11715 Position (kb) 2462 2463 2464 2465Strain fitness (log2 ratio) -1 0 1at 2461.479 kb on - strand, within BWI76_RS11695at 2461.480 kb on - strand, within BWI76_RS11695at 2461.535 kb on - strand, within BWI76_RS11695at 2461.554 kb on + strand, within BWI76_RS11695at 2461.579 kb on + strand, within BWI76_RS11695at 2461.714 kb on + strandat 2461.714 kb on + strandat 2461.731 kb on + strandat 2461.777 kb on - strandat 2461.777 kb on - strandat 2461.777 kb on - strandat 2461.777 kb on - strandat 2461.857 kb on - strandat 2461.869 kb on - strandat 2462.037 kb on + strand, within BWI76_RS11700at 2462.426 kb on + strandat 2462.634 kb on + strandat 2462.979 kb on + strand, within BWI76_RS11705at 2463.547 kb on - strand, within BWI76_RS11705at 2463.739 kb on + strand, within BWI76_RS11705at 2464.134 kb on - strand, within BWI76_RS11705at 2464.152 kb on + strand, within BWI76_RS11705at 2464.354 kb on + strandat 2464.364 kb on + strandat 2464.364 kb on - strandat 2464.443 kb on - strandat 2464.458 kb on - strandat 2464.567 kb on - strandat 2464.988 kb on - strand, within BWI76_RS11710at 2465.039 kb on - strand, within BWI76_RS11710at 2465.052 kb on + strand, within BWI76_RS11710at 2465.137 kb on - strand, within BWI76_RS11710

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml
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2,461,479 - BWI76_RS11695 0.50 +0.3
2,461,480 - BWI76_RS11695 0.50 -0.3
2,461,535 - BWI76_RS11695 0.62 -0.1
2,461,554 + BWI76_RS11695 0.66 +0.1
2,461,579 + BWI76_RS11695 0.71 -0.4
2,461,714 + -0.1
2,461,714 + -1.1
2,461,731 + +0.5
2,461,777 - -0.6
2,461,777 - +0.3
2,461,777 - +1.4
2,461,777 - -1.1
2,461,857 - -0.0
2,461,869 - +0.6
2,462,037 + BWI76_RS11700 0.20 -1.6
2,462,426 + +0.5
2,462,634 + +0.1
2,462,979 + BWI76_RS11705 0.25 -0.1
2,463,547 - BWI76_RS11705 0.52 +0.2
2,463,739 + BWI76_RS11705 0.62 +0.2
2,464,134 - BWI76_RS11705 0.81 +0.3
2,464,152 + BWI76_RS11705 0.82 +0.2
2,464,354 + -0.3
2,464,364 + -0.0
2,464,364 - +0.9
2,464,443 - +0.4
2,464,458 - +0.5
2,464,567 - -0.3
2,464,988 - BWI76_RS11710 0.51 -0.1
2,465,039 - BWI76_RS11710 0.57 +0.5
2,465,052 + BWI76_RS11710 0.58 -0.4
2,465,137 - BWI76_RS11710 0.68 -0.7

Or see this region's nucleotide sequence