Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11170

Experiment: Cephalothin 0.16 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS11165 and BWI76_RS11170 are separated by 36 nucleotidesBWI76_RS11170 and BWI76_RS11175 are separated by 233 nucleotides BWI76_RS11165: BWI76_RS11165 - beta-N-acetylhexosaminidase, at 2,352,837 to 2,353,859 _RS11165 BWI76_RS11170: BWI76_RS11170 - hypothetical protein, at 2,353,896 to 2,354,438 _RS11170 BWI76_RS11175: BWI76_RS11175 - NADH dehydrogenase, at 2,354,672 to 2,355,976 _RS11175 Position (kb) 2353 2354 2355Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2352.951 kb on - strandat 2353.075 kb on - strand, within BWI76_RS11165at 2353.102 kb on + strand, within BWI76_RS11165at 2353.102 kb on + strand, within BWI76_RS11165at 2353.110 kb on - strand, within BWI76_RS11165at 2353.206 kb on + strand, within BWI76_RS11165at 2353.214 kb on - strand, within BWI76_RS11165at 2353.799 kb on - strandat 2353.821 kb on - strandat 2354.214 kb on - strand, within BWI76_RS11170at 2354.721 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml
remove
2,352,951 - -0.2
2,353,075 - BWI76_RS11165 0.23 -1.9
2,353,102 + BWI76_RS11165 0.26 -2.5
2,353,102 + BWI76_RS11165 0.26 -3.5
2,353,110 - BWI76_RS11165 0.27 -3.1
2,353,206 + BWI76_RS11165 0.36 -3.8
2,353,214 - BWI76_RS11165 0.37 -0.9
2,353,799 - -2.7
2,353,821 - -2.8
2,354,214 - BWI76_RS11170 0.59 -0.5
2,354,721 + -0.3

Or see this region's nucleotide sequence