Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09100

Experiment: Cephalothin 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09095 and BWI76_RS09100 are separated by 37 nucleotidesBWI76_RS09100 and BWI76_RS09105 are separated by 52 nucleotidesBWI76_RS09105 and BWI76_RS09110 are separated by 1 nucleotides BWI76_RS09095: BWI76_RS09095 - glutathione ABC transporter ATP-binding protein GsiA, at 1,920,217 to 1,922,070 _RS09095 BWI76_RS09100: BWI76_RS09100 - glutathione ABC transporter substrate-binding protein GsiB, at 1,922,108 to 1,923,646 _RS09100 BWI76_RS09105: BWI76_RS09105 - glutathione ABC transporter permease GsiC, at 1,923,699 to 1,924,619 _RS09105 BWI76_RS09110: BWI76_RS09110 - glutathione ABC transporter permease GsiD, at 1,924,621 to 1,925,532 _RS09110 Position (kb) 1922 1923 1924Strain fitness (log2 ratio) -2 -1 0 1at 1921.154 kb on + strand, within BWI76_RS09095at 1921.255 kb on + strand, within BWI76_RS09095at 1921.436 kb on - strand, within BWI76_RS09095at 1921.998 kb on - strandat 1922.048 kb on + strandat 1922.112 kb on - strandat 1922.267 kb on + strand, within BWI76_RS09100at 1922.338 kb on + strand, within BWI76_RS09100at 1922.340 kb on + strand, within BWI76_RS09100at 1922.373 kb on - strand, within BWI76_RS09100at 1922.390 kb on + strand, within BWI76_RS09100at 1922.482 kb on + strand, within BWI76_RS09100at 1922.996 kb on - strand, within BWI76_RS09100at 1923.155 kb on + strand, within BWI76_RS09100at 1923.201 kb on + strand, within BWI76_RS09100at 1923.496 kb on + strandat 1923.504 kb on - strandat 1923.504 kb on - strandat 1923.504 kb on - strandat 1923.992 kb on + strand, within BWI76_RS09105at 1924.096 kb on - strand, within BWI76_RS09105at 1924.452 kb on + strand, within BWI76_RS09105

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml
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1,921,154 + BWI76_RS09095 0.51 +0.1
1,921,255 + BWI76_RS09095 0.56 +0.3
1,921,436 - BWI76_RS09095 0.66 +0.3
1,921,998 - +0.2
1,922,048 + -0.2
1,922,112 - -0.2
1,922,267 + BWI76_RS09100 0.10 -0.5
1,922,338 + BWI76_RS09100 0.15 -0.8
1,922,340 + BWI76_RS09100 0.15 -0.6
1,922,373 - BWI76_RS09100 0.17 +0.9
1,922,390 + BWI76_RS09100 0.18 -0.2
1,922,482 + BWI76_RS09100 0.24 -0.7
1,922,996 - BWI76_RS09100 0.58 -0.7
1,923,155 + BWI76_RS09100 0.68 -1.1
1,923,201 + BWI76_RS09100 0.71 -2.2
1,923,496 + +0.2
1,923,504 - -0.7
1,923,504 - +0.1
1,923,504 - -1.1
1,923,992 + BWI76_RS09105 0.32 -0.1
1,924,096 - BWI76_RS09105 0.43 +1.0
1,924,452 + BWI76_RS09105 0.82 +0.1

Or see this region's nucleotide sequence