Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08640

Experiment: Cephalothin 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08635 and BWI76_RS08640 are separated by 153 nucleotidesBWI76_RS08640 and BWI76_RS08645 are separated by 143 nucleotidesBWI76_RS08645 and BWI76_RS08650 overlap by 1 nucleotides BWI76_RS08635: BWI76_RS08635 - molybdenum-dependent transcriptional regulator, at 1,822,088 to 1,822,876 _RS08635 BWI76_RS08640: BWI76_RS08640 - multidrug efflux pump-associated protein, AcrZ family, at 1,823,030 to 1,823,179 _RS08640 BWI76_RS08645: BWI76_RS08645 - molybdate ABC transporter substrate-binding protein, at 1,823,323 to 1,824,096 _RS08645 BWI76_RS08650: BWI76_RS08650 - molybdate ABC transporter permease, at 1,824,096 to 1,824,785 _RS08650 Position (kb) 1823 1824Strain fitness (log2 ratio) -2 -1 0 1at 1822.063 kb on - strandat 1822.231 kb on + strand, within BWI76_RS08635at 1822.565 kb on + strand, within BWI76_RS08635at 1822.640 kb on + strand, within BWI76_RS08635at 1822.661 kb on + strand, within BWI76_RS08635at 1822.711 kb on - strand, within BWI76_RS08635at 1822.792 kb on - strand, within BWI76_RS08635at 1822.807 kb on + strandat 1822.959 kb on + strandat 1823.024 kb on - strandat 1823.066 kb on + strand, within BWI76_RS08640at 1823.226 kb on + strandat 1823.234 kb on - strandat 1823.336 kb on + strandat 1823.433 kb on + strand, within BWI76_RS08645at 1823.441 kb on - strand, within BWI76_RS08645at 1823.906 kb on + strand, within BWI76_RS08645at 1824.126 kb on + strandat 1824.170 kb on - strand, within BWI76_RS08650

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml
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1,822,063 - -0.5
1,822,231 + BWI76_RS08635 0.18 -0.2
1,822,565 + BWI76_RS08635 0.60 +1.3
1,822,640 + BWI76_RS08635 0.70 +0.3
1,822,661 + BWI76_RS08635 0.73 -0.3
1,822,711 - BWI76_RS08635 0.79 -0.1
1,822,792 - BWI76_RS08635 0.89 -0.9
1,822,807 + -1.1
1,822,959 + +0.0
1,823,024 - -2.2
1,823,066 + BWI76_RS08640 0.24 -1.8
1,823,226 + +0.1
1,823,234 - +1.4
1,823,336 + -0.3
1,823,433 + BWI76_RS08645 0.14 +0.2
1,823,441 - BWI76_RS08645 0.15 +0.3
1,823,906 + BWI76_RS08645 0.75 +1.0
1,824,126 + -0.1
1,824,170 - BWI76_RS08650 0.11 -0.8

Or see this region's nucleotide sequence