Experiment: Cephalothin 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07870 and BWI76_RS07875 are separated by 5 nucleotides BWI76_RS07875 and BWI76_RS07880 are separated by 38 nucleotides BWI76_RS07880 and BWI76_RS07885 are separated by 11 nucleotides
BWI76_RS07870: BWI76_RS07870 - carbohydrate kinase, at 1,670,027 to 1,671,514
_RS07870
BWI76_RS07875: BWI76_RS07875 - dihydrofolate reductase, at 1,671,520 to 1,672,548
_RS07875
BWI76_RS07880: BWI76_RS07880 - PfkB domain-containing protein, at 1,672,587 to 1,673,531
_RS07880
BWI76_RS07885: BWI76_RS07885 - sugar ABC transporter permease, at 1,673,543 to 1,674,544
_RS07885
Position (kb) 1671
1672
1673 Strain fitness (log2 ratio) -1
0
1 at 1671.163 kb on - strand, within BWI76_RS07870 at 1671.190 kb on - strand, within BWI76_RS07870 at 1671.200 kb on - strand, within BWI76_RS07870 at 1671.417 kb on + strand at 1671.478 kb on - strand at 1671.614 kb on - strand at 1671.682 kb on - strand, within BWI76_RS07875 at 1671.999 kb on + strand, within BWI76_RS07875 at 1672.036 kb on - strand, within BWI76_RS07875 at 1672.102 kb on - strand, within BWI76_RS07875 at 1672.234 kb on - strand, within BWI76_RS07875 at 1672.789 kb on + strand, within BWI76_RS07880 at 1672.994 kb on + strand, within BWI76_RS07880 at 1673.002 kb on - strand, within BWI76_RS07880 at 1673.186 kb on + strand, within BWI76_RS07880 at 1673.186 kb on + strand, within BWI76_RS07880 at 1673.278 kb on - strand, within BWI76_RS07880 at 1673.524 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml remove 1,671,163 - BWI76_RS07870 0.76 -0.2 1,671,190 - BWI76_RS07870 0.78 +0.3 1,671,200 - BWI76_RS07870 0.79 -0.2 1,671,417 + -0.2 1,671,478 - -0.2 1,671,614 - +1.3 1,671,682 - BWI76_RS07875 0.16 -0.4 1,671,999 + BWI76_RS07875 0.47 +0.1 1,672,036 - BWI76_RS07875 0.50 -0.1 1,672,102 - BWI76_RS07875 0.57 +0.0 1,672,234 - BWI76_RS07875 0.69 -0.3 1,672,789 + BWI76_RS07880 0.21 -0.4 1,672,994 + BWI76_RS07880 0.43 +0.1 1,673,002 - BWI76_RS07880 0.44 +0.1 1,673,186 + BWI76_RS07880 0.63 +0.1 1,673,186 + BWI76_RS07880 0.63 -0.0 1,673,278 - BWI76_RS07880 0.73 +0.4 1,673,524 - -0.1
Or see this region's nucleotide sequence