Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02820

Experiment: Cephalothin 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02815 and BWI76_RS02820 are separated by 175 nucleotidesBWI76_RS02820 and BWI76_RS02825 are separated by 64 nucleotidesBWI76_RS02825 and BWI76_RS02830 are separated by 162 nucleotides BWI76_RS02815: BWI76_RS02815 - fructose-bisphosphatase class I, at 574,848 to 575,846 _RS02815 BWI76_RS02820: BWI76_RS02820 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 576,022 to 577,395 _RS02820 BWI76_RS02825: BWI76_RS02825 - putative acyltransferase domain protein, at 577,460 to 578,005 _RS02825 BWI76_RS02830: BWI76_RS02830 - DUF4432 domain-containing protein, at 578,168 to 579,376 _RS02830 Position (kb) 576 577 578Strain fitness (log2 ratio) -2 -1 0 1at 575.069 kb on + strand, within BWI76_RS02815at 575.351 kb on - strand, within BWI76_RS02815at 575.631 kb on - strand, within BWI76_RS02815at 575.769 kb on + strandat 575.865 kb on - strandat 575.922 kb on + strandat 575.928 kb on - strandat 575.979 kb on + strandat 576.100 kb on - strandat 576.100 kb on - strandat 576.128 kb on - strandat 576.546 kb on + strand, within BWI76_RS02820at 576.731 kb on + strand, within BWI76_RS02820at 576.739 kb on - strand, within BWI76_RS02820at 576.792 kb on + strand, within BWI76_RS02820at 576.909 kb on - strand, within BWI76_RS02820at 577.147 kb on - strand, within BWI76_RS02820at 577.269 kb on + strandat 577.396 kb on + strandat 577.522 kb on + strand, within BWI76_RS02825at 577.528 kb on - strand, within BWI76_RS02825at 577.552 kb on + strand, within BWI76_RS02825at 577.560 kb on - strand, within BWI76_RS02825at 577.634 kb on + strand, within BWI76_RS02825at 577.911 kb on + strand, within BWI76_RS02825at 578.213 kb on + strandat 578.264 kb on + strandat 578.272 kb on + strandat 578.272 kb on - strandat 578.277 kb on - strandat 578.282 kb on - strandat 578.307 kb on + strand, within BWI76_RS02830at 578.358 kb on - strand, within BWI76_RS02830

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml
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575,069 + BWI76_RS02815 0.22 -1.2
575,351 - BWI76_RS02815 0.50 +0.5
575,631 - BWI76_RS02815 0.78 -0.2
575,769 + -0.8
575,865 - +0.1
575,922 + -0.0
575,928 - +0.2
575,979 + -0.1
576,100 - -1.7
576,100 - -1.6
576,128 - +0.1
576,546 + BWI76_RS02820 0.38 -1.4
576,731 + BWI76_RS02820 0.52 -1.1
576,739 - BWI76_RS02820 0.52 -1.5
576,792 + BWI76_RS02820 0.56 -2.7
576,909 - BWI76_RS02820 0.65 -1.4
577,147 - BWI76_RS02820 0.82 -2.2
577,269 + -0.3
577,396 + -0.2
577,522 + BWI76_RS02825 0.11 -0.2
577,528 - BWI76_RS02825 0.12 +0.4
577,552 + BWI76_RS02825 0.17 -1.5
577,560 - BWI76_RS02825 0.18 -0.1
577,634 + BWI76_RS02825 0.32 +0.3
577,911 + BWI76_RS02825 0.83 -0.7
578,213 + -0.4
578,264 + +0.1
578,272 + +0.7
578,272 - +0.7
578,277 - +0.1
578,282 - +0.2
578,307 + BWI76_RS02830 0.11 +0.4
578,358 - BWI76_RS02830 0.16 -0.1

Or see this region's nucleotide sequence