Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2873

Experiment: MoLS4 with Chlorite 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargJ and DvMF_2873 are separated by 336 nucleotidesDvMF_2873 and DvMF_2874 are separated by 528 nucleotides DvMF_2872: argJ - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein (RefSeq), at 3,625,240 to 3,626,478 argJ DvMF_2873: DvMF_2873 - preprotein translocase subunit SecA (RefSeq), at 3,626,815 to 3,629,349 _2873 DvMF_2874: DvMF_2874 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,629,878 to 3,631,284 _2874 Position (kb) 3626 3627 3628 3629 3630Strain fitness (log2 ratio) -9 -8 -7 -6 -5 -4 -3 -2 -1 0 1at 3625.907 kb on + strand, within argJat 3626.116 kb on - strand, within argJat 3626.241 kb on - strand, within argJat 3626.808 kb on - strandat 3629.613 kb on - strandat 3629.750 kb on - strandat 3629.909 kb on - strandat 3630.101 kb on - strand, within DvMF_2874at 3630.288 kb on + strand, within DvMF_2874at 3630.294 kb on - strand, within DvMF_2874

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 6.25 mM
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3,625,907 + argJ DvMF_2872 0.54 -2.8
3,626,116 - argJ DvMF_2872 0.71 -9.4
3,626,241 - argJ DvMF_2872 0.81 -4.1
3,626,808 - -0.7
3,629,613 - -0.7
3,629,750 - -0.6
3,629,909 - -0.3
3,630,101 - DvMF_2874 0.16 -0.2
3,630,288 + DvMF_2874 0.29 -0.5
3,630,294 - DvMF_2874 0.30 -0.7

Or see this region's nucleotide sequence