Experiment: MoLS4 with Chlorite 6.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2423 and DvMF_2424 are separated by 10 nucleotides DvMF_2424 and DvMF_2425 are separated by 83 nucleotides DvMF_2425 and DvMF_2426 are separated by 99 nucleotides
DvMF_2423: DvMF_2423 - hypothetical protein (RefSeq), at 3,059,914 to 3,060,930
_2423
DvMF_2424: DvMF_2424 - hypothetical protein (RefSeq), at 3,060,941 to 3,061,774
_2424
DvMF_2425: DvMF_2425 - hypothetical protein (RefSeq), at 3,061,858 to 3,062,364
_2425
DvMF_2426: DvMF_2426 - type III secretion outer membrane pore, YscC/HrcC family (RefSeq), at 3,062,464 to 3,064,464
_2426
Position (kb)
3061
3062
3063 Strain fitness (log2 ratio)
-1
0
1 at 3061.011 kb on - strand at 3061.125 kb on + strand, within DvMF_2424 at 3061.262 kb on + strand, within DvMF_2424 at 3061.269 kb on - strand, within DvMF_2424 at 3061.382 kb on + strand, within DvMF_2424 at 3061.383 kb on - strand, within DvMF_2424 at 3061.586 kb on - strand, within DvMF_2424 at 3061.736 kb on - strand at 3061.962 kb on + strand, within DvMF_2425 at 3062.135 kb on + strand, within DvMF_2425 at 3062.476 kb on + strand at 3062.491 kb on - strand at 3062.666 kb on + strand, within DvMF_2426 at 3062.666 kb on + strand, within DvMF_2426 at 3062.969 kb on - strand, within DvMF_2426 at 3063.058 kb on + strand, within DvMF_2426 at 3063.291 kb on + strand, within DvMF_2426 at 3063.306 kb on + strand, within DvMF_2426 at 3063.338 kb on - strand, within DvMF_2426
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 6.25 mM remove 3,061,011 - -0.5 3,061,125 + DvMF_2424 0.22 -0.6 3,061,262 + DvMF_2424 0.38 -0.6 3,061,269 - DvMF_2424 0.39 -0.5 3,061,382 + DvMF_2424 0.53 -0.6 3,061,383 - DvMF_2424 0.53 -0.7 3,061,586 - DvMF_2424 0.77 -0.3 3,061,736 - -0.0 3,061,962 + DvMF_2425 0.21 +0.5 3,062,135 + DvMF_2425 0.55 -0.1 3,062,476 + -0.3 3,062,491 - -0.7 3,062,666 + DvMF_2426 0.10 -0.1 3,062,666 + DvMF_2426 0.10 -0.1 3,062,969 - DvMF_2426 0.25 -0.5 3,063,058 + DvMF_2426 0.30 -0.6 3,063,291 + DvMF_2426 0.41 +0.1 3,063,306 + DvMF_2426 0.42 -0.3 3,063,338 - DvMF_2426 0.44 -0.3
Or see this region's nucleotide sequence