Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1960

Experiment: MoLS4 with Chlorite 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpotC and DvMF_1959 are separated by 1 nucleotidesDvMF_1959 and potA overlap by 14 nucleotides DvMF_1958: potC - spermidine/putrescine ABC transporter membrane protein (RefSeq), at 2,419,854 to 2,420,654 potC DvMF_1959: DvMF_1959 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,420,656 to 2,421,624 _1959 DvMF_1960: potA - putrescine/spermidine ABC transporter ATPase protein (RefSeq), at 2,421,611 to 2,422,810 potA Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -1 0 1at 2420.656 kb on - strandat 2420.668 kb on - strandat 2420.787 kb on + strand, within DvMF_1959at 2420.850 kb on - strand, within DvMF_1959at 2421.324 kb on + strand, within DvMF_1959at 2421.336 kb on + strand, within DvMF_1959at 2421.497 kb on - strand, within DvMF_1959at 2421.608 kb on + strandat 2421.608 kb on + strandat 2421.758 kb on - strand, within potAat 2422.062 kb on + strand, within potAat 2422.357 kb on - strand, within potAat 2422.473 kb on - strand, within potAat 2422.551 kb on + strand, within potAat 2422.579 kb on + strand, within potAat 2422.729 kb on + strandat 2422.737 kb on - strandat 2422.801 kb on + strandat 2422.843 kb on + strandat 2422.896 kb on - strandat 2422.953 kb on - strandat 2423.170 kb on + strandat 2423.349 kb on + strandat 2423.394 kb on + strandat 2423.484 kb on + strandat 2423.493 kb on - strandat 2423.627 kb on + strandat 2423.637 kb on + strandat 2423.637 kb on + strandat 2423.637 kb on + strandat 2423.724 kb on - strandat 2423.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 6.25 mM
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2,420,656 - -0.5
2,420,668 - -0.5
2,420,787 + DvMF_1959 0.14 -0.7
2,420,850 - DvMF_1959 0.20 -0.5
2,421,324 + DvMF_1959 0.69 -0.3
2,421,336 + DvMF_1959 0.70 -0.4
2,421,497 - DvMF_1959 0.87 -0.0
2,421,608 + -0.2
2,421,608 + +0.6
2,421,758 - potA DvMF_1960 0.12 -0.1
2,422,062 + potA DvMF_1960 0.38 -0.3
2,422,357 - potA DvMF_1960 0.62 -0.6
2,422,473 - potA DvMF_1960 0.72 -0.4
2,422,551 + potA DvMF_1960 0.78 -1.1
2,422,579 + potA DvMF_1960 0.81 -0.6
2,422,729 + +0.5
2,422,737 - -0.3
2,422,801 + -0.5
2,422,843 + +0.2
2,422,896 - -0.4
2,422,953 - -0.5
2,423,170 + -0.2
2,423,349 + -0.5
2,423,394 + +0.7
2,423,484 + -0.2
2,423,493 - -0.5
2,423,627 + -0.6
2,423,637 + -0.2
2,423,637 + -0.3
2,423,637 + -0.1
2,423,724 - +0.2
2,423,808 + -0.0

Or see this region's nucleotide sequence