Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1539

Experiment: MoLS4 with Chlorite 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1538 and DvMF_1539 are separated by 354 nucleotidesDvMF_1539 and DvMF_1540 are separated by 192 nucleotides DvMF_1538: DvMF_1538 - Leucyl aminopeptidase (RefSeq), at 1,897,638 to 1,899,203 _1538 DvMF_1539: DvMF_1539 - Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) (RefSeq), at 1,899,558 to 1,900,877 _1539 DvMF_1540: DvMF_1540 - H(+)-transporting two-sector ATPase (RefSeq), at 1,901,070 to 1,902,434 _1540 Position (kb) 1899 1900 1901Strain fitness (log2 ratio) -2 -1 0 1at 1898.702 kb on - strand, within DvMF_1538at 1898.858 kb on - strand, within DvMF_1538at 1898.922 kb on - strand, within DvMF_1538at 1898.975 kb on + strand, within DvMF_1538at 1898.977 kb on - strand, within DvMF_1538at 1899.013 kb on + strand, within DvMF_1538at 1899.178 kb on - strandat 1899.427 kb on + strandat 1899.496 kb on + strandat 1899.590 kb on + strandat 1899.741 kb on + strand, within DvMF_1539at 1899.769 kb on + strand, within DvMF_1539at 1899.787 kb on - strand, within DvMF_1539at 1899.935 kb on + strand, within DvMF_1539at 1899.943 kb on - strand, within DvMF_1539at 1900.300 kb on + strand, within DvMF_1539at 1900.644 kb on + strand, within DvMF_1539at 1900.767 kb on - strandat 1900.796 kb on + strandat 1900.810 kb on + strandat 1900.866 kb on - strandat 1900.901 kb on - strandat 1900.977 kb on + strandat 1901.255 kb on - strand, within DvMF_1540at 1901.533 kb on - strand, within DvMF_1540at 1901.549 kb on + strand, within DvMF_1540at 1901.557 kb on - strand, within DvMF_1540at 1901.557 kb on - strand, within DvMF_1540at 1901.619 kb on + strand, within DvMF_1540at 1901.629 kb on + strand, within DvMF_1540at 1901.778 kb on + strand, within DvMF_1540at 1901.807 kb on + strand, within DvMF_1540at 1901.815 kb on - strand, within DvMF_1540

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 6.25 mM
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1,898,702 - DvMF_1538 0.68 -0.5
1,898,858 - DvMF_1538 0.78 -0.4
1,898,922 - DvMF_1538 0.82 -0.8
1,898,975 + DvMF_1538 0.85 -0.4
1,898,977 - DvMF_1538 0.86 -0.4
1,899,013 + DvMF_1538 0.88 -0.1
1,899,178 - -0.3
1,899,427 + -0.8
1,899,496 + -0.5
1,899,590 + -0.6
1,899,741 + DvMF_1539 0.14 -2.0
1,899,769 + DvMF_1539 0.16 -1.2
1,899,787 - DvMF_1539 0.17 -0.5
1,899,935 + DvMF_1539 0.29 -0.5
1,899,943 - DvMF_1539 0.29 -1.7
1,900,300 + DvMF_1539 0.56 -0.6
1,900,644 + DvMF_1539 0.82 -0.1
1,900,767 - -0.5
1,900,796 + -1.7
1,900,810 + -0.3
1,900,866 - -0.2
1,900,901 - -0.5
1,900,977 + -0.6
1,901,255 - DvMF_1540 0.14 -0.7
1,901,533 - DvMF_1540 0.34 +0.1
1,901,549 + DvMF_1540 0.35 -0.7
1,901,557 - DvMF_1540 0.36 -0.9
1,901,557 - DvMF_1540 0.36 -0.7
1,901,619 + DvMF_1540 0.40 -0.7
1,901,629 + DvMF_1540 0.41 -2.1
1,901,778 + DvMF_1540 0.52 -0.6
1,901,807 + DvMF_1540 0.54 -0.5
1,901,815 - DvMF_1540 0.55 -0.8

Or see this region's nucleotide sequence