Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1113

Experiment: MoLS4 with Chlorite 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1112 and DvMF_1113 are separated by 77 nucleotidesDvMF_1113 and DvMF_1114 are separated by 145 nucleotides DvMF_1112: DvMF_1112 - hypothetical protein (RefSeq), at 1,361,478 to 1,362,383 _1112 DvMF_1113: DvMF_1113 - hypothetical protein (RefSeq), at 1,362,461 to 1,363,273 _1113 DvMF_1114: DvMF_1114 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,363,419 to 1,365,521 _1114 Position (kb) 1362 1363 1364Strain fitness (log2 ratio) -2 -1 0 1 2at 1361.591 kb on - strand, within DvMF_1112at 1361.591 kb on - strand, within DvMF_1112at 1361.899 kb on + strand, within DvMF_1112at 1361.899 kb on + strand, within DvMF_1112at 1361.907 kb on - strand, within DvMF_1112at 1361.913 kb on - strand, within DvMF_1112at 1362.088 kb on - strand, within DvMF_1112at 1362.148 kb on - strand, within DvMF_1112at 1362.537 kb on + strandat 1362.645 kb on + strand, within DvMF_1113at 1362.981 kb on - strand, within DvMF_1113at 1362.981 kb on - strand, within DvMF_1113at 1363.029 kb on - strand, within DvMF_1113at 1363.093 kb on - strand, within DvMF_1113at 1363.112 kb on + strand, within DvMF_1113at 1363.290 kb on + strandat 1363.298 kb on - strandat 1363.343 kb on - strandat 1363.370 kb on + strandat 1363.396 kb on - strandat 1363.465 kb on + strandat 1363.752 kb on + strand, within DvMF_1114at 1363.774 kb on + strand, within DvMF_1114at 1363.848 kb on + strand, within DvMF_1114at 1363.989 kb on - strand, within DvMF_1114

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 6.25 mM
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1,361,591 - DvMF_1112 0.12 -0.5
1,361,591 - DvMF_1112 0.12 +2.1
1,361,899 + DvMF_1112 0.46 +0.4
1,361,899 + DvMF_1112 0.46 -0.6
1,361,907 - DvMF_1112 0.47 -0.5
1,361,913 - DvMF_1112 0.48 -0.4
1,362,088 - DvMF_1112 0.67 -0.9
1,362,148 - DvMF_1112 0.74 -0.2
1,362,537 + -0.6
1,362,645 + DvMF_1113 0.23 -0.4
1,362,981 - DvMF_1113 0.64 -0.4
1,362,981 - DvMF_1113 0.64 +0.1
1,363,029 - DvMF_1113 0.70 -2.6
1,363,093 - DvMF_1113 0.78 +0.4
1,363,112 + DvMF_1113 0.80 +0.0
1,363,290 + +1.1
1,363,298 - -0.3
1,363,343 - +0.0
1,363,370 + -0.2
1,363,396 - +0.0
1,363,465 + -0.6
1,363,752 + DvMF_1114 0.16 -0.5
1,363,774 + DvMF_1114 0.17 -0.8
1,363,848 + DvMF_1114 0.20 -0.5
1,363,989 - DvMF_1114 0.27 -1.3

Or see this region's nucleotide sequence