Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0931

Experiment: MoLS4 with Chlorite 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0930 and DvMF_0931 are separated by 153 nucleotidesDvMF_0931 and DvMF_0932 are separated by 10 nucleotidesDvMF_0932 and DvMF_0933 are separated by 2 nucleotides DvMF_0930: DvMF_0930 - cytoplasmic chaperone TorD family protein (RefSeq), at 1,128,058 to 1,128,780 _0930 DvMF_0931: DvMF_0931 - molybdopterin oxidoreductase (RefSeq), at 1,128,934 to 1,131,165 _0931 DvMF_0932: DvMF_0932 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,131,176 to 1,131,763 _0932 DvMF_0933: DvMF_0933 - molybdopterin-containing oxidoreductase membrane anchor subunit (RefSeq), at 1,131,766 to 1,132,599 _0933 Position (kb) 1128 1129 1130 1131 1132Strain fitness (log2 ratio) -2 -1 0 1 2at 1128.023 kb on - strandat 1128.342 kb on - strand, within DvMF_0930at 1128.490 kb on + strand, within DvMF_0930at 1128.491 kb on + strand, within DvMF_0930at 1128.543 kb on + strand, within DvMF_0930at 1128.622 kb on - strand, within DvMF_0930at 1128.634 kb on + strand, within DvMF_0930at 1129.010 kb on + strandat 1129.110 kb on + strandat 1129.125 kb on + strandat 1129.168 kb on + strand, within DvMF_0931at 1129.240 kb on + strand, within DvMF_0931at 1129.299 kb on - strand, within DvMF_0931at 1129.425 kb on + strand, within DvMF_0931at 1129.575 kb on - strand, within DvMF_0931at 1129.582 kb on - strand, within DvMF_0931at 1129.604 kb on - strand, within DvMF_0931at 1129.668 kb on + strand, within DvMF_0931at 1129.694 kb on - strand, within DvMF_0931at 1129.736 kb on + strand, within DvMF_0931at 1130.546 kb on - strand, within DvMF_0931at 1130.780 kb on - strand, within DvMF_0931at 1130.838 kb on + strand, within DvMF_0931at 1130.919 kb on + strand, within DvMF_0931at 1130.919 kb on + strand, within DvMF_0931at 1130.919 kb on + strand, within DvMF_0931at 1130.933 kb on - strand, within DvMF_0931at 1130.963 kb on - strandat 1131.019 kb on + strandat 1131.403 kb on + strand, within DvMF_0932at 1131.404 kb on - strand, within DvMF_0932at 1131.449 kb on - strand, within DvMF_0932at 1131.535 kb on - strand, within DvMF_0932at 1131.646 kb on + strand, within DvMF_0932at 1131.646 kb on + strand, within DvMF_0932at 1131.679 kb on - strand, within DvMF_0932at 1131.756 kb on + strandat 1131.760 kb on - strandat 1131.793 kb on - strandat 1131.835 kb on - strandat 1132.115 kb on + strand, within DvMF_0933

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 6.25 mM
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1,128,023 - +0.0
1,128,342 - DvMF_0930 0.39 -0.7
1,128,490 + DvMF_0930 0.60 -0.6
1,128,491 + DvMF_0930 0.60 +1.9
1,128,543 + DvMF_0930 0.67 +0.1
1,128,622 - DvMF_0930 0.78 -0.6
1,128,634 + DvMF_0930 0.80 -0.4
1,129,010 + -0.3
1,129,110 + -0.5
1,129,125 + -0.2
1,129,168 + DvMF_0931 0.10 -0.1
1,129,240 + DvMF_0931 0.14 -0.8
1,129,299 - DvMF_0931 0.16 +0.8
1,129,425 + DvMF_0931 0.22 +0.0
1,129,575 - DvMF_0931 0.29 -0.2
1,129,582 - DvMF_0931 0.29 +0.3
1,129,604 - DvMF_0931 0.30 -0.1
1,129,668 + DvMF_0931 0.33 -0.3
1,129,694 - DvMF_0931 0.34 -0.1
1,129,736 + DvMF_0931 0.36 -0.6
1,130,546 - DvMF_0931 0.72 -0.6
1,130,780 - DvMF_0931 0.83 -0.6
1,130,838 + DvMF_0931 0.85 -1.5
1,130,919 + DvMF_0931 0.89 -0.8
1,130,919 + DvMF_0931 0.89 -0.3
1,130,919 + DvMF_0931 0.89 -0.3
1,130,933 - DvMF_0931 0.90 -0.4
1,130,963 - -0.4
1,131,019 + -0.4
1,131,403 + DvMF_0932 0.39 +0.2
1,131,404 - DvMF_0932 0.39 -0.2
1,131,449 - DvMF_0932 0.46 -0.5
1,131,535 - DvMF_0932 0.61 -0.4
1,131,646 + DvMF_0932 0.80 -0.4
1,131,646 + DvMF_0932 0.80 -0.6
1,131,679 - DvMF_0932 0.86 +2.2
1,131,756 + +0.7
1,131,760 - -0.4
1,131,793 - -1.0
1,131,835 - -0.4
1,132,115 + DvMF_0933 0.42 -1.8

Or see this region's nucleotide sequence