Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0062

Experiment: MoLS4 with Chlorite 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0061 and DvMF_0062 are separated by 33 nucleotidesDvMF_0062 and DvMF_0063 are separated by 158 nucleotidesDvMF_0063 and DvMF_0064 overlap by 4 nucleotides DvMF_0061: DvMF_0061 - primosomal protein N' (RefSeq), at 79,119 to 81,539 _0061 DvMF_0062: DvMF_0062 - hypothetical protein (RefSeq), at 81,573 to 81,740 _0062 DvMF_0063: DvMF_0063 - response regulator receiver protein (RefSeq), at 81,899 to 82,291 _0063 DvMF_0064: DvMF_0064 - histidine kinase (RefSeq), at 82,288 to 84,084 _0064 Position (kb) 81 82Strain fitness (log2 ratio) -1 0 1at 81.610 kb on + strand, within DvMF_0062at 81.671 kb on - strand, within DvMF_0062at 81.896 kb on + strandat 82.023 kb on - strand, within DvMF_0063at 82.325 kb on + strandat 82.484 kb on + strand, within DvMF_0064at 82.538 kb on + strand, within DvMF_0064at 82.692 kb on - strand, within DvMF_0064

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 6.25 mM
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81,610 + DvMF_0062 0.22 -0.2
81,671 - DvMF_0062 0.58 -0.3
81,896 + -0.8
82,023 - DvMF_0063 0.32 +0.8
82,325 + -0.6
82,484 + DvMF_0064 0.11 -0.9
82,538 + DvMF_0064 0.14 -0.9
82,692 - DvMF_0064 0.22 -1.0

Or see this region's nucleotide sequence