Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_R0005

Experiment: MoLS4 with Chlorite 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0007 and DvMF_R0002 are separated by 71 nucleotidesDvMF_R0002 and DvMF_R0003 are separated by 57 nucleotidesDvMF_R0003 and DvMF_R0004 are separated by 8 nucleotidesDvMF_R0004 and DvMF_R0005 are separated by 13 nucleotidesDvMF_R0005 and DvMF_0008 are separated by 475 nucleotides DvMF_0007: DvMF_0007 - protein of unknown function DUF302 (RefSeq), at 9,037 to 9,444 _0007 DvMF_R0002: DvMF_R0002 - tRNA-Gly (RefSeq), at 9,516 to 9,590 _R0002 DvMF_R0003: DvMF_R0003 - tRNA-Gly (RefSeq), at 9,648 to 9,722 _R0003 DvMF_R0004: DvMF_R0004 - tRNA-Cys (RefSeq), at 9,731 to 9,805 _R0004 DvMF_R0005: DvMF_R0005 - tRNA-Gly (RefSeq), at 9,819 to 9,893 _R0005 DvMF_0008: DvMF_0008 - transcriptional regulator, TraR/DksA family (RefSeq), at 10,369 to 10,731 _0008 Position (kb) 9 10Strain fitness (log2 ratio) -3 -2 -1 0 1at 8.966 kb on - strandat 8.993 kb on - strandat 9.136 kb on - strand, within DvMF_0007at 9.189 kb on + strand, within DvMF_0007at 9.241 kb on + strand, within DvMF_0007at 9.268 kb on + strand, within DvMF_0007at 9.268 kb on + strand, within DvMF_0007at 9.362 kb on + strand, within DvMF_0007at 9.399 kb on - strand, within DvMF_0007at 9.412 kb on + strandat 9.553 kb on - strand, within DvMF_R0002at 9.702 kb on + strand, within DvMF_R0003at 10.109 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 6.25 mM
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8,966 - -0.3
8,993 - -0.1
9,136 - DvMF_0007 0.24 -0.2
9,189 + DvMF_0007 0.37 -0.3
9,241 + DvMF_0007 0.50 -1.1
9,268 + DvMF_0007 0.57 -0.3
9,268 + DvMF_0007 0.57 -0.8
9,362 + DvMF_0007 0.80 -0.6
9,399 - DvMF_0007 0.89 -0.6
9,412 + -3.0
9,553 - DvMF_R0002 0.49 -0.2
9,702 + DvMF_R0003 0.72 -0.5
10,109 + -0.5

Or see this region's nucleotide sequence