Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.477.1 and Xcc-8004.478.1 are separated by 78 nucleotides Xcc-8004.478.1 and Xcc-8004.479.1 are separated by 4 nucleotides Xcc-8004.479.1 and Xcc-8004.480.1 are separated by 224 nucleotides
Xcc-8004.477.1: Xcc-8004.477.1 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 439,853 to 441,061
Xcc-8004.477.1
Xcc-8004.478.1: Xcc-8004.478.1 - Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3), at 441,140 to 441,871
Xcc-8004.478.1
Xcc-8004.479.1: Xcc-8004.479.1 - Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3), at 441,876 to 442,439
Xcc-8004.479.1
Xcc-8004.480.1: Xcc-8004.480.1 - 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2), at 442,664 to 444,025
Xcc-8004.480.1
Position (kb) 441
442
443 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 441.016 kb on + strand at 441.036 kb on + strand at 441.036 kb on + strand at 441.222 kb on - strand, within Xcc-8004.478.1 at 441.237 kb on - strand, within Xcc-8004.478.1 at 441.442 kb on + strand, within Xcc-8004.478.1 at 441.442 kb on + strand, within Xcc-8004.478.1 at 441.442 kb on + strand, within Xcc-8004.478.1 at 441.443 kb on - strand, within Xcc-8004.478.1 at 441.443 kb on - strand, within Xcc-8004.478.1 at 441.617 kb on + strand, within Xcc-8004.478.1 at 441.617 kb on + strand, within Xcc-8004.478.1 at 441.618 kb on - strand, within Xcc-8004.478.1 at 441.618 kb on - strand, within Xcc-8004.478.1 at 441.618 kb on - strand, within Xcc-8004.478.1 at 441.618 kb on - strand, within Xcc-8004.478.1 at 441.640 kb on + strand, within Xcc-8004.478.1 at 441.654 kb on + strand, within Xcc-8004.478.1 at 441.695 kb on + strand, within Xcc-8004.478.1 at 441.695 kb on + strand, within Xcc-8004.478.1 at 441.695 kb on + strand, within Xcc-8004.478.1 at 441.695 kb on + strand, within Xcc-8004.478.1 at 441.695 kb on + strand, within Xcc-8004.478.1 at 441.695 kb on + strand, within Xcc-8004.478.1 at 441.696 kb on - strand, within Xcc-8004.478.1 at 441.696 kb on - strand, within Xcc-8004.478.1 at 441.696 kb on - strand, within Xcc-8004.478.1 at 441.734 kb on + strand, within Xcc-8004.478.1 at 441.734 kb on + strand, within Xcc-8004.478.1 at 441.734 kb on + strand, within Xcc-8004.478.1 at 441.734 kb on + strand, within Xcc-8004.478.1 at 441.734 kb on + strand, within Xcc-8004.478.1 at 441.735 kb on - strand, within Xcc-8004.478.1 at 441.735 kb on - strand, within Xcc-8004.478.1 at 441.810 kb on - strand at 441.942 kb on + strand, within Xcc-8004.479.1 at 441.942 kb on + strand, within Xcc-8004.479.1 at 441.942 kb on + strand, within Xcc-8004.479.1 at 441.942 kb on + strand, within Xcc-8004.479.1 at 441.943 kb on - strand, within Xcc-8004.479.1 at 441.943 kb on - strand, within Xcc-8004.479.1 at 442.048 kb on + strand, within Xcc-8004.479.1 at 442.048 kb on + strand, within Xcc-8004.479.1 at 442.049 kb on - strand, within Xcc-8004.479.1 at 442.049 kb on - strand, within Xcc-8004.479.1 at 442.049 kb on - strand, within Xcc-8004.479.1 at 442.049 kb on - strand, within Xcc-8004.479.1 at 442.074 kb on + strand, within Xcc-8004.479.1 at 442.074 kb on + strand, within Xcc-8004.479.1 at 442.074 kb on + strand, within Xcc-8004.479.1 at 442.074 kb on + strand, within Xcc-8004.479.1 at 442.074 kb on + strand, within Xcc-8004.479.1 at 442.075 kb on - strand, within Xcc-8004.479.1 at 442.075 kb on - strand, within Xcc-8004.479.1 at 442.075 kb on - strand, within Xcc-8004.479.1 at 442.075 kb on - strand, within Xcc-8004.479.1 at 442.075 kb on - strand, within Xcc-8004.479.1 at 442.075 kb on - strand, within Xcc-8004.479.1 at 442.075 kb on - strand, within Xcc-8004.479.1 at 442.075 kb on - strand, within Xcc-8004.479.1 at 442.075 kb on - strand, within Xcc-8004.479.1 at 442.075 kb on - strand, within Xcc-8004.479.1 at 442.075 kb on - strand, within Xcc-8004.479.1 at 442.075 kb on - strand, within Xcc-8004.479.1 at 442.075 kb on - strand, within Xcc-8004.479.1 at 442.281 kb on + strand, within Xcc-8004.479.1 at 442.281 kb on + strand, within Xcc-8004.479.1 at 442.383 kb on + strand at 442.383 kb on + strand at 442.383 kb on + strand at 442.384 kb on - strand at 442.384 kb on - strand at 442.384 kb on - strand at 442.384 kb on - strand at 442.434 kb on + strand at 442.434 kb on + strand at 442.435 kb on - strand at 442.475 kb on - strand at 443.152 kb on - strand, within Xcc-8004.480.1 at 443.222 kb on - strand, within Xcc-8004.480.1 at 443.323 kb on + strand, within Xcc-8004.480.1 at 443.323 kb on + strand, within Xcc-8004.480.1 at 443.323 kb on + strand, within Xcc-8004.480.1 at 443.324 kb on - strand, within Xcc-8004.480.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 441,016 + +0.4 441,036 + -2.2 441,036 + -3.1 441,222 - Xcc-8004.478.1 0.11 +0.0 441,237 - Xcc-8004.478.1 0.13 +0.9 441,442 + Xcc-8004.478.1 0.41 +0.9 441,442 + Xcc-8004.478.1 0.41 +1.5 441,442 + Xcc-8004.478.1 0.41 -0.8 441,443 - Xcc-8004.478.1 0.41 +0.5 441,443 - Xcc-8004.478.1 0.41 +0.7 441,617 + Xcc-8004.478.1 0.65 +0.5 441,617 + Xcc-8004.478.1 0.65 -1.1 441,618 - Xcc-8004.478.1 0.65 -0.8 441,618 - Xcc-8004.478.1 0.65 -0.7 441,618 - Xcc-8004.478.1 0.65 -3.6 441,618 - Xcc-8004.478.1 0.65 -0.2 441,640 + Xcc-8004.478.1 0.68 +0.2 441,654 + Xcc-8004.478.1 0.70 -0.6 441,695 + Xcc-8004.478.1 0.76 +0.6 441,695 + Xcc-8004.478.1 0.76 -0.3 441,695 + Xcc-8004.478.1 0.76 +1.5 441,695 + Xcc-8004.478.1 0.76 -1.1 441,695 + Xcc-8004.478.1 0.76 +1.5 441,695 + Xcc-8004.478.1 0.76 +1.5 441,696 - Xcc-8004.478.1 0.76 -0.3 441,696 - Xcc-8004.478.1 0.76 +2.7 441,696 - Xcc-8004.478.1 0.76 +0.3 441,734 + Xcc-8004.478.1 0.81 +0.0 441,734 + Xcc-8004.478.1 0.81 +0.2 441,734 + Xcc-8004.478.1 0.81 -0.3 441,734 + Xcc-8004.478.1 0.81 -0.8 441,734 + Xcc-8004.478.1 0.81 -0.7 441,735 - Xcc-8004.478.1 0.81 -0.6 441,735 - Xcc-8004.478.1 0.81 -1.1 441,810 - -0.2 441,942 + Xcc-8004.479.1 0.12 -1.4 441,942 + Xcc-8004.479.1 0.12 +0.4 441,942 + Xcc-8004.479.1 0.12 -1.8 441,942 + Xcc-8004.479.1 0.12 +2.4 441,943 - Xcc-8004.479.1 0.12 -1.2 441,943 - Xcc-8004.479.1 0.12 +1.2 442,048 + Xcc-8004.479.1 0.30 -1.1 442,048 + Xcc-8004.479.1 0.30 +0.6 442,049 - Xcc-8004.479.1 0.31 +0.7 442,049 - Xcc-8004.479.1 0.31 -2.1 442,049 - Xcc-8004.479.1 0.31 +0.0 442,049 - Xcc-8004.479.1 0.31 -1.8 442,074 + Xcc-8004.479.1 0.35 -1.5 442,074 + Xcc-8004.479.1 0.35 -1.3 442,074 + Xcc-8004.479.1 0.35 +0.0 442,074 + Xcc-8004.479.1 0.35 -1.1 442,074 + Xcc-8004.479.1 0.35 +0.5 442,075 - Xcc-8004.479.1 0.35 -0.1 442,075 - Xcc-8004.479.1 0.35 +2.4 442,075 - Xcc-8004.479.1 0.35 +1.1 442,075 - Xcc-8004.479.1 0.35 -0.8 442,075 - Xcc-8004.479.1 0.35 +0.3 442,075 - Xcc-8004.479.1 0.35 +0.8 442,075 - Xcc-8004.479.1 0.35 +1.7 442,075 - Xcc-8004.479.1 0.35 -1.2 442,075 - Xcc-8004.479.1 0.35 -1.2 442,075 - Xcc-8004.479.1 0.35 -0.1 442,075 - Xcc-8004.479.1 0.35 -0.8 442,075 - Xcc-8004.479.1 0.35 +0.3 442,075 - Xcc-8004.479.1 0.35 -0.5 442,281 + Xcc-8004.479.1 0.72 -2.7 442,281 + Xcc-8004.479.1 0.72 -1.1 442,383 + -0.7 442,383 + +0.5 442,383 + -0.0 442,384 - -2.9 442,384 - -2.4 442,384 - +0.1 442,384 - -1.7 442,434 + +1.0 442,434 + -0.9 442,435 - -0.7 442,475 - +0.9 443,152 - Xcc-8004.480.1 0.36 +1.4 443,222 - Xcc-8004.480.1 0.41 +0.5 443,323 + Xcc-8004.480.1 0.48 -0.7 443,323 + Xcc-8004.480.1 0.48 -2.4 443,323 + Xcc-8004.480.1 0.48 -0.7 443,324 - Xcc-8004.480.1 0.48 -0.4
Or see this region's nucleotide sequence