Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3852.1 and Xcc-8004.3853.1 are separated by 34 nucleotides Xcc-8004.3853.1 and Xcc-8004.3854.1 are separated by 1 nucleotides Xcc-8004.3854.1 and Xcc-8004.3855.1 are separated by 63 nucleotides
Xcc-8004.3852.1: Xcc-8004.3852.1 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 3,723,189 to 3,723,986
Xcc-8004.3852.1
Xcc-8004.3853.1: Xcc-8004.3853.1 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 3,724,021 to 3,724,695
Xcc-8004.3853.1
Xcc-8004.3854.1: Xcc-8004.3854.1 - COG2363, at 3,724,697 to 3,725,101
Xcc-8004.3854.1
Xcc-8004.3855.1: Xcc-8004.3855.1 - FIG01209965: hypothetical protein, at 3,725,165 to 3,726,346
Xcc-8004.3855.1
Position (kb) 3724
3725
3726 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3723.705 kb on + strand, within Xcc-8004.3852.1 at 3723.705 kb on + strand, within Xcc-8004.3852.1 at 3723.706 kb on - strand, within Xcc-8004.3852.1 at 3724.059 kb on + strand at 3724.059 kb on + strand at 3724.086 kb on - strand at 3724.097 kb on + strand, within Xcc-8004.3853.1 at 3724.098 kb on - strand, within Xcc-8004.3853.1 at 3724.842 kb on + strand, within Xcc-8004.3854.1 at 3724.842 kb on + strand, within Xcc-8004.3854.1 at 3724.842 kb on + strand, within Xcc-8004.3854.1 at 3724.843 kb on - strand, within Xcc-8004.3854.1 at 3724.917 kb on + strand, within Xcc-8004.3854.1 at 3724.917 kb on + strand, within Xcc-8004.3854.1 at 3724.977 kb on + strand, within Xcc-8004.3854.1 at 3724.978 kb on - strand, within Xcc-8004.3854.1 at 3725.166 kb on + strand at 3725.166 kb on + strand at 3725.166 kb on + strand at 3725.181 kb on + strand at 3725.190 kb on + strand at 3725.190 kb on + strand at 3725.190 kb on + strand at 3725.190 kb on + strand at 3725.190 kb on + strand at 3725.191 kb on - strand at 3725.191 kb on - strand at 3725.191 kb on - strand at 3725.191 kb on - strand at 3725.191 kb on - strand at 3725.191 kb on - strand at 3725.194 kb on + strand at 3725.195 kb on - strand at 3725.195 kb on - strand at 3725.242 kb on - strand at 3725.242 kb on - strand at 3725.297 kb on - strand, within Xcc-8004.3855.1 at 3725.297 kb on - strand, within Xcc-8004.3855.1 at 3725.331 kb on + strand, within Xcc-8004.3855.1 at 3725.331 kb on + strand, within Xcc-8004.3855.1 at 3725.331 kb on + strand, within Xcc-8004.3855.1 at 3725.331 kb on + strand, within Xcc-8004.3855.1 at 3725.332 kb on - strand, within Xcc-8004.3855.1 at 3725.332 kb on - strand, within Xcc-8004.3855.1 at 3725.332 kb on - strand, within Xcc-8004.3855.1 at 3725.332 kb on - strand, within Xcc-8004.3855.1 at 3725.332 kb on - strand, within Xcc-8004.3855.1 at 3725.332 kb on - strand, within Xcc-8004.3855.1 at 3725.370 kb on + strand, within Xcc-8004.3855.1 at 3725.562 kb on + strand, within Xcc-8004.3855.1 at 3725.562 kb on + strand, within Xcc-8004.3855.1 at 3725.562 kb on + strand, within Xcc-8004.3855.1 at 3725.562 kb on + strand, within Xcc-8004.3855.1 at 3725.563 kb on - strand, within Xcc-8004.3855.1 at 3725.563 kb on - strand, within Xcc-8004.3855.1 at 3725.563 kb on - strand, within Xcc-8004.3855.1 at 3725.790 kb on + strand, within Xcc-8004.3855.1 at 3725.790 kb on + strand, within Xcc-8004.3855.1 at 3725.910 kb on + strand, within Xcc-8004.3855.1 at 3725.910 kb on + strand, within Xcc-8004.3855.1 at 3725.911 kb on - strand, within Xcc-8004.3855.1 at 3725.911 kb on - strand, within Xcc-8004.3855.1 at 3725.911 kb on - strand, within Xcc-8004.3855.1 at 3725.922 kb on + strand, within Xcc-8004.3855.1 at 3725.923 kb on - strand, within Xcc-8004.3855.1 at 3725.923 kb on - strand, within Xcc-8004.3855.1 at 3725.923 kb on - strand, within Xcc-8004.3855.1 at 3726.079 kb on - strand, within Xcc-8004.3855.1 at 3726.096 kb on + strand, within Xcc-8004.3855.1 at 3726.096 kb on + strand, within Xcc-8004.3855.1 at 3726.097 kb on - strand, within Xcc-8004.3855.1 at 3726.097 kb on - strand, within Xcc-8004.3855.1 at 3726.097 kb on - strand, within Xcc-8004.3855.1 at 3726.097 kb on - strand, within Xcc-8004.3855.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,723,705 + Xcc-8004.3852.1 0.65 -0.6 3,723,705 + Xcc-8004.3852.1 0.65 -0.3 3,723,706 - Xcc-8004.3852.1 0.65 -1.1 3,724,059 + -0.5 3,724,059 + -0.2 3,724,086 - -0.6 3,724,097 + Xcc-8004.3853.1 0.11 -0.4 3,724,098 - Xcc-8004.3853.1 0.11 +0.4 3,724,842 + Xcc-8004.3854.1 0.36 +0.9 3,724,842 + Xcc-8004.3854.1 0.36 -1.3 3,724,842 + Xcc-8004.3854.1 0.36 -0.6 3,724,843 - Xcc-8004.3854.1 0.36 -0.4 3,724,917 + Xcc-8004.3854.1 0.54 +0.1 3,724,917 + Xcc-8004.3854.1 0.54 -1.8 3,724,977 + Xcc-8004.3854.1 0.69 +1.0 3,724,978 - Xcc-8004.3854.1 0.69 -3.0 3,725,166 + +1.7 3,725,166 + +0.4 3,725,166 + -0.5 3,725,181 + -1.4 3,725,190 + -0.1 3,725,190 + -0.3 3,725,190 + -0.7 3,725,190 + -1.0 3,725,190 + -0.1 3,725,191 - -2.9 3,725,191 - +0.3 3,725,191 - -1.0 3,725,191 - -1.3 3,725,191 - -0.9 3,725,191 - -1.4 3,725,194 + +0.9 3,725,195 - +0.5 3,725,195 - +0.1 3,725,242 - -2.4 3,725,242 - +0.2 3,725,297 - Xcc-8004.3855.1 0.11 -1.8 3,725,297 - Xcc-8004.3855.1 0.11 +1.5 3,725,331 + Xcc-8004.3855.1 0.14 -1.9 3,725,331 + Xcc-8004.3855.1 0.14 -1.3 3,725,331 + Xcc-8004.3855.1 0.14 -1.3 3,725,331 + Xcc-8004.3855.1 0.14 -0.8 3,725,332 - Xcc-8004.3855.1 0.14 -1.5 3,725,332 - Xcc-8004.3855.1 0.14 -1.4 3,725,332 - Xcc-8004.3855.1 0.14 -1.6 3,725,332 - Xcc-8004.3855.1 0.14 +2.0 3,725,332 - Xcc-8004.3855.1 0.14 -0.6 3,725,332 - Xcc-8004.3855.1 0.14 +0.3 3,725,370 + Xcc-8004.3855.1 0.17 -2.0 3,725,562 + Xcc-8004.3855.1 0.34 -0.1 3,725,562 + Xcc-8004.3855.1 0.34 +0.2 3,725,562 + Xcc-8004.3855.1 0.34 -1.9 3,725,562 + Xcc-8004.3855.1 0.34 -0.8 3,725,563 - Xcc-8004.3855.1 0.34 +1.5 3,725,563 - Xcc-8004.3855.1 0.34 +1.2 3,725,563 - Xcc-8004.3855.1 0.34 -0.1 3,725,790 + Xcc-8004.3855.1 0.53 -0.1 3,725,790 + Xcc-8004.3855.1 0.53 -1.4 3,725,910 + Xcc-8004.3855.1 0.63 -1.2 3,725,910 + Xcc-8004.3855.1 0.63 -3.0 3,725,911 - Xcc-8004.3855.1 0.63 -2.2 3,725,911 - Xcc-8004.3855.1 0.63 -1.9 3,725,911 - Xcc-8004.3855.1 0.63 -2.5 3,725,922 + Xcc-8004.3855.1 0.64 -2.0 3,725,923 - Xcc-8004.3855.1 0.64 -2.3 3,725,923 - Xcc-8004.3855.1 0.64 -0.1 3,725,923 - Xcc-8004.3855.1 0.64 -1.4 3,726,079 - Xcc-8004.3855.1 0.77 -0.1 3,726,096 + Xcc-8004.3855.1 0.79 -0.3 3,726,096 + Xcc-8004.3855.1 0.79 -1.4 3,726,097 - Xcc-8004.3855.1 0.79 -1.7 3,726,097 - Xcc-8004.3855.1 0.79 -1.3 3,726,097 - Xcc-8004.3855.1 0.79 -1.7 3,726,097 - Xcc-8004.3855.1 0.79 -2.4
Or see this region's nucleotide sequence