Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3847.1 and Xcc-8004.3848.1 are separated by 9 nucleotides Xcc-8004.3848.1 and Xcc-8004.3849.1 overlap by 4 nucleotides Xcc-8004.3849.1 and Xcc-8004.3851.1 overlap by 4 nucleotides Xcc-8004.3851.1 and Xcc-8004.3852.1 are separated by 139 nucleotides Xcc-8004.3852.1 and Xcc-8004.3853.1 are separated by 34 nucleotides Xcc-8004.3853.1 and Xcc-8004.3854.1 are separated by 1 nucleotides
Xcc-8004.3847.1: Xcc-8004.3847.1 - Membrane protease family protein BA0301, at 3,721,534 to 3,722,403
Xcc-8004.3847.1
Xcc-8004.3848.1: Xcc-8004.3848.1 - FIG01212003: hypothetical protein, at 3,722,413 to 3,722,697
Xcc-8004.3848.1
Xcc-8004.3849.1: Xcc-8004.3849.1 - FIG01210549: hypothetical protein, at 3,722,694 to 3,722,873
Xcc-8004.3849.1
Xcc-8004.3851.1: Xcc-8004.3851.1 - putative; ORF located using Glimmer/Genemark, at 3,722,870 to 3,723,049
Xcc-8004.3851.1
Xcc-8004.3852.1: Xcc-8004.3852.1 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 3,723,189 to 3,723,986
Xcc-8004.3852.1
Xcc-8004.3853.1: Xcc-8004.3853.1 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 3,724,021 to 3,724,695
Xcc-8004.3853.1
Xcc-8004.3854.1: Xcc-8004.3854.1 - COG2363, at 3,724,697 to 3,725,101
Xcc-8004.3854.1
Position (kb) 3723
3724 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3722.325 kb on + strand at 3722.325 kb on + strand at 3722.326 kb on - strand at 3722.398 kb on + strand at 3722.399 kb on - strand at 3722.569 kb on + strand, within Xcc-8004.3848.1 at 3722.599 kb on + strand, within Xcc-8004.3848.1 at 3722.599 kb on + strand, within Xcc-8004.3848.1 at 3722.600 kb on - strand, within Xcc-8004.3848.1 at 3722.600 kb on - strand, within Xcc-8004.3848.1 at 3722.600 kb on - strand, within Xcc-8004.3848.1 at 3722.712 kb on + strand, within Xcc-8004.3849.1 at 3722.773 kb on + strand, within Xcc-8004.3849.1 at 3722.773 kb on + strand, within Xcc-8004.3849.1 at 3722.774 kb on - strand, within Xcc-8004.3849.1 at 3722.799 kb on + strand, within Xcc-8004.3849.1 at 3722.800 kb on - strand, within Xcc-8004.3849.1 at 3722.800 kb on - strand, within Xcc-8004.3849.1 at 3722.803 kb on + strand, within Xcc-8004.3849.1 at 3722.803 kb on + strand, within Xcc-8004.3849.1 at 3722.803 kb on + strand, within Xcc-8004.3849.1 at 3722.803 kb on + strand, within Xcc-8004.3849.1 at 3722.803 kb on + strand, within Xcc-8004.3849.1 at 3722.803 kb on + strand, within Xcc-8004.3849.1 at 3722.804 kb on - strand, within Xcc-8004.3849.1 at 3722.804 kb on - strand, within Xcc-8004.3849.1 at 3722.804 kb on - strand, within Xcc-8004.3849.1 at 3722.804 kb on - strand, within Xcc-8004.3849.1 at 3722.804 kb on - strand, within Xcc-8004.3849.1 at 3723.030 kb on + strand, within Xcc-8004.3851.1 at 3723.031 kb on - strand, within Xcc-8004.3851.1 at 3723.133 kb on + strand at 3723.133 kb on + strand at 3723.134 kb on - strand at 3723.134 kb on - strand at 3723.134 kb on - strand at 3723.134 kb on - strand at 3723.171 kb on + strand at 3723.330 kb on + strand, within Xcc-8004.3852.1 at 3723.330 kb on + strand, within Xcc-8004.3852.1 at 3723.330 kb on + strand, within Xcc-8004.3852.1 at 3723.330 kb on + strand, within Xcc-8004.3852.1 at 3723.519 kb on + strand, within Xcc-8004.3852.1 at 3723.519 kb on + strand, within Xcc-8004.3852.1 at 3723.520 kb on - strand, within Xcc-8004.3852.1 at 3723.520 kb on - strand, within Xcc-8004.3852.1 at 3723.520 kb on - strand, within Xcc-8004.3852.1 at 3723.520 kb on - strand, within Xcc-8004.3852.1 at 3723.520 kb on - strand, within Xcc-8004.3852.1 at 3723.520 kb on - strand, within Xcc-8004.3852.1 at 3723.705 kb on + strand, within Xcc-8004.3852.1 at 3723.705 kb on + strand, within Xcc-8004.3852.1 at 3723.706 kb on - strand, within Xcc-8004.3852.1 at 3724.059 kb on + strand at 3724.059 kb on + strand at 3724.086 kb on - strand at 3724.097 kb on + strand, within Xcc-8004.3853.1 at 3724.098 kb on - strand, within Xcc-8004.3853.1 at 3724.842 kb on + strand, within Xcc-8004.3854.1 at 3724.842 kb on + strand, within Xcc-8004.3854.1 at 3724.842 kb on + strand, within Xcc-8004.3854.1 at 3724.843 kb on - strand, within Xcc-8004.3854.1 at 3724.917 kb on + strand, within Xcc-8004.3854.1 at 3724.917 kb on + strand, within Xcc-8004.3854.1 at 3724.977 kb on + strand, within Xcc-8004.3854.1 at 3724.978 kb on - strand, within Xcc-8004.3854.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,722,325 + -1.0 3,722,325 + -0.0 3,722,326 - -1.1 3,722,398 + -1.0 3,722,399 - -0.1 3,722,569 + Xcc-8004.3848.1 0.55 +0.9 3,722,599 + Xcc-8004.3848.1 0.65 -0.9 3,722,599 + Xcc-8004.3848.1 0.65 -1.6 3,722,600 - Xcc-8004.3848.1 0.66 -0.9 3,722,600 - Xcc-8004.3848.1 0.66 -2.2 3,722,600 - Xcc-8004.3848.1 0.66 +0.5 3,722,712 + Xcc-8004.3849.1 0.10 -1.0 3,722,773 + Xcc-8004.3849.1 0.44 -0.8 3,722,773 + Xcc-8004.3849.1 0.44 -2.2 3,722,774 - Xcc-8004.3849.1 0.44 -0.4 3,722,799 + Xcc-8004.3849.1 0.58 -0.9 3,722,800 - Xcc-8004.3849.1 0.59 +0.6 3,722,800 - Xcc-8004.3849.1 0.59 -1.2 3,722,803 + Xcc-8004.3849.1 0.61 +0.9 3,722,803 + Xcc-8004.3849.1 0.61 -1.6 3,722,803 + Xcc-8004.3849.1 0.61 -1.6 3,722,803 + Xcc-8004.3849.1 0.61 -2.0 3,722,803 + Xcc-8004.3849.1 0.61 -1.3 3,722,803 + Xcc-8004.3849.1 0.61 +0.5 3,722,804 - Xcc-8004.3849.1 0.61 -0.8 3,722,804 - Xcc-8004.3849.1 0.61 -1.4 3,722,804 - Xcc-8004.3849.1 0.61 -2.9 3,722,804 - Xcc-8004.3849.1 0.61 +0.8 3,722,804 - Xcc-8004.3849.1 0.61 +0.9 3,723,030 + Xcc-8004.3851.1 0.89 +0.9 3,723,031 - Xcc-8004.3851.1 0.89 -0.2 3,723,133 + +0.8 3,723,133 + +0.7 3,723,134 - -2.4 3,723,134 - +0.2 3,723,134 - +0.0 3,723,134 - -0.8 3,723,171 + -0.4 3,723,330 + Xcc-8004.3852.1 0.18 +0.8 3,723,330 + Xcc-8004.3852.1 0.18 +1.2 3,723,330 + Xcc-8004.3852.1 0.18 -0.2 3,723,330 + Xcc-8004.3852.1 0.18 -0.4 3,723,519 + Xcc-8004.3852.1 0.41 +0.4 3,723,519 + Xcc-8004.3852.1 0.41 +0.0 3,723,520 - Xcc-8004.3852.1 0.41 +0.2 3,723,520 - Xcc-8004.3852.1 0.41 +1.6 3,723,520 - Xcc-8004.3852.1 0.41 +0.1 3,723,520 - Xcc-8004.3852.1 0.41 +0.3 3,723,520 - Xcc-8004.3852.1 0.41 -2.4 3,723,520 - Xcc-8004.3852.1 0.41 +1.7 3,723,705 + Xcc-8004.3852.1 0.65 -0.6 3,723,705 + Xcc-8004.3852.1 0.65 -0.3 3,723,706 - Xcc-8004.3852.1 0.65 -1.1 3,724,059 + -0.5 3,724,059 + -0.2 3,724,086 - -0.6 3,724,097 + Xcc-8004.3853.1 0.11 -0.4 3,724,098 - Xcc-8004.3853.1 0.11 +0.4 3,724,842 + Xcc-8004.3854.1 0.36 +0.9 3,724,842 + Xcc-8004.3854.1 0.36 -1.3 3,724,842 + Xcc-8004.3854.1 0.36 -0.6 3,724,843 - Xcc-8004.3854.1 0.36 -0.4 3,724,917 + Xcc-8004.3854.1 0.54 +0.1 3,724,917 + Xcc-8004.3854.1 0.54 -1.8 3,724,977 + Xcc-8004.3854.1 0.69 +1.0 3,724,978 - Xcc-8004.3854.1 0.69 -3.0
Or see this region's nucleotide sequence