Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3228.1 and Xcc-8004.3230.1 are separated by 180 nucleotides Xcc-8004.3230.1 and Xcc-8004.3229.1 are separated by 52 nucleotides Xcc-8004.3229.1 and Xcc-8004.3231.1 are separated by 255 nucleotides Xcc-8004.3231.1 and Xcc-8004.3232.1 overlap by 23 nucleotides
Xcc-8004.3228.1: Xcc-8004.3228.1 - hypothetical protein, at 3,138,141 to 3,138,392
Xcc-8004.3228.1
Xcc-8004.3230.1: Xcc-8004.3230.1 - Phage DNA invertase, at 3,138,573 to 3,139,139
Xcc-8004.3230.1
Xcc-8004.3229.1: Xcc-8004.3229.1 - avirulence protein, at 3,139,192 to 3,140,259
Xcc-8004.3229.1
Xcc-8004.3231.1: Xcc-8004.3231.1 - hypothetical protein, at 3,140,515 to 3,140,955
Xcc-8004.3231.1
Xcc-8004.3232.1: Xcc-8004.3232.1 - Mobile element protein, at 3,140,933 to 3,141,985
Xcc-8004.3232.1
Position (kb) 3139
3140
3141 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3138.241 kb on - strand, within Xcc-8004.3228.1 at 3138.339 kb on + strand, within Xcc-8004.3228.1 at 3138.339 kb on + strand, within Xcc-8004.3228.1 at 3138.339 kb on + strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.340 kb on - strand, within Xcc-8004.3228.1 at 3138.476 kb on + strand at 3138.571 kb on + strand at 3138.571 kb on + strand at 3138.577 kb on + strand at 3138.577 kb on + strand at 3138.577 kb on + strand at 3138.577 kb on + strand at 3138.577 kb on + strand at 3138.578 kb on - strand at 3138.578 kb on - strand at 3138.578 kb on - strand at 3138.588 kb on + strand at 3138.589 kb on - strand at 3138.589 kb on - strand at 3138.726 kb on + strand, within Xcc-8004.3230.1 at 3138.727 kb on - strand, within Xcc-8004.3230.1 at 3139.052 kb on + strand, within Xcc-8004.3230.1 at 3139.052 kb on + strand, within Xcc-8004.3230.1 at 3139.052 kb on + strand, within Xcc-8004.3230.1 at 3139.052 kb on + strand, within Xcc-8004.3230.1 at 3139.052 kb on + strand, within Xcc-8004.3230.1 at 3139.099 kb on + strand at 3139.099 kb on + strand at 3139.099 kb on + strand at 3139.100 kb on - strand at 3139.100 kb on - strand at 3139.101 kb on + strand at 3139.102 kb on - strand at 3139.102 kb on - strand at 3139.121 kb on + strand at 3139.121 kb on + strand at 3139.122 kb on - strand at 3139.122 kb on - strand at 3139.295 kb on + strand at 3139.295 kb on + strand at 3139.322 kb on - strand, within Xcc-8004.3229.1 at 3139.346 kb on + strand, within Xcc-8004.3229.1 at 3139.346 kb on + strand, within Xcc-8004.3229.1 at 3139.346 kb on + strand, within Xcc-8004.3229.1 at 3139.346 kb on + strand, within Xcc-8004.3229.1 at 3139.346 kb on + strand, within Xcc-8004.3229.1 at 3139.346 kb on + strand, within Xcc-8004.3229.1 at 3139.347 kb on - strand, within Xcc-8004.3229.1 at 3139.347 kb on - strand, within Xcc-8004.3229.1 at 3139.415 kb on + strand, within Xcc-8004.3229.1 at 3139.415 kb on + strand, within Xcc-8004.3229.1 at 3139.416 kb on - strand, within Xcc-8004.3229.1 at 3139.416 kb on - strand, within Xcc-8004.3229.1 at 3139.441 kb on - strand, within Xcc-8004.3229.1 at 3139.441 kb on - strand, within Xcc-8004.3229.1 at 3139.441 kb on - strand, within Xcc-8004.3229.1 at 3139.441 kb on - strand, within Xcc-8004.3229.1 at 3139.472 kb on + strand, within Xcc-8004.3229.1 at 3139.472 kb on + strand, within Xcc-8004.3229.1 at 3139.472 kb on + strand, within Xcc-8004.3229.1 at 3139.472 kb on + strand, within Xcc-8004.3229.1 at 3139.472 kb on + strand, within Xcc-8004.3229.1 at 3139.473 kb on - strand, within Xcc-8004.3229.1 at 3139.473 kb on - strand, within Xcc-8004.3229.1 at 3139.473 kb on - strand, within Xcc-8004.3229.1 at 3139.473 kb on - strand, within Xcc-8004.3229.1 at 3139.473 kb on - strand, within Xcc-8004.3229.1 at 3139.485 kb on + strand, within Xcc-8004.3229.1 at 3139.570 kb on + strand, within Xcc-8004.3229.1 at 3139.570 kb on + strand, within Xcc-8004.3229.1 at 3139.570 kb on + strand, within Xcc-8004.3229.1 at 3139.570 kb on + strand, within Xcc-8004.3229.1 at 3139.570 kb on + strand, within Xcc-8004.3229.1 at 3139.571 kb on - strand, within Xcc-8004.3229.1 at 3139.571 kb on - strand, within Xcc-8004.3229.1 at 3139.571 kb on - strand, within Xcc-8004.3229.1 at 3139.590 kb on - strand, within Xcc-8004.3229.1 at 3139.616 kb on - strand, within Xcc-8004.3229.1 at 3139.616 kb on - strand, within Xcc-8004.3229.1 at 3139.676 kb on - strand, within Xcc-8004.3229.1 at 3139.694 kb on + strand, within Xcc-8004.3229.1 at 3139.694 kb on + strand, within Xcc-8004.3229.1 at 3139.703 kb on + strand, within Xcc-8004.3229.1 at 3139.704 kb on - strand, within Xcc-8004.3229.1 at 3139.729 kb on + strand, within Xcc-8004.3229.1 at 3139.729 kb on + strand, within Xcc-8004.3229.1 at 3139.729 kb on + strand, within Xcc-8004.3229.1 at 3139.729 kb on + strand, within Xcc-8004.3229.1 at 3139.729 kb on + strand, within Xcc-8004.3229.1 at 3139.729 kb on + strand, within Xcc-8004.3229.1 at 3139.730 kb on - strand, within Xcc-8004.3229.1 at 3139.868 kb on + strand, within Xcc-8004.3229.1 at 3139.868 kb on + strand, within Xcc-8004.3229.1 at 3139.869 kb on - strand, within Xcc-8004.3229.1 at 3139.883 kb on + strand, within Xcc-8004.3229.1 at 3139.883 kb on + strand, within Xcc-8004.3229.1 at 3139.884 kb on - strand, within Xcc-8004.3229.1 at 3140.048 kb on + strand, within Xcc-8004.3229.1 at 3140.048 kb on + strand, within Xcc-8004.3229.1 at 3140.077 kb on + strand, within Xcc-8004.3229.1 at 3140.077 kb on + strand, within Xcc-8004.3229.1 at 3140.078 kb on - strand, within Xcc-8004.3229.1 at 3140.078 kb on - strand, within Xcc-8004.3229.1 at 3140.078 kb on - strand, within Xcc-8004.3229.1 at 3140.078 kb on - strand, within Xcc-8004.3229.1 at 3140.175 kb on + strand at 3140.211 kb on - strand at 3140.211 kb on - strand at 3140.251 kb on + strand at 3140.251 kb on + strand at 3140.251 kb on + strand at 3140.251 kb on + strand at 3140.252 kb on - strand at 3140.252 kb on - strand at 3140.252 kb on - strand at 3140.292 kb on + strand at 3140.510 kb on + strand at 3140.510 kb on + strand at 3140.511 kb on - strand at 3140.557 kb on - strand at 3140.608 kb on + strand, within Xcc-8004.3231.1 at 3140.608 kb on + strand, within Xcc-8004.3231.1 at 3140.609 kb on - strand, within Xcc-8004.3231.1 at 3140.657 kb on + strand, within Xcc-8004.3231.1 at 3140.658 kb on - strand, within Xcc-8004.3231.1 at 3140.791 kb on + strand, within Xcc-8004.3231.1 at 3140.854 kb on - strand, within Xcc-8004.3231.1 at 3140.925 kb on - strand at 3140.925 kb on - strand at 3140.925 kb on - strand at 3140.935 kb on - strand at 3140.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,138,241 - Xcc-8004.3228.1 0.40 +0.0 3,138,339 + Xcc-8004.3228.1 0.79 +0.3 3,138,339 + Xcc-8004.3228.1 0.79 -1.0 3,138,339 + Xcc-8004.3228.1 0.79 -0.7 3,138,340 - Xcc-8004.3228.1 0.79 +0.6 3,138,340 - Xcc-8004.3228.1 0.79 +0.3 3,138,340 - Xcc-8004.3228.1 0.79 -2.0 3,138,340 - Xcc-8004.3228.1 0.79 -0.9 3,138,340 - Xcc-8004.3228.1 0.79 +1.2 3,138,340 - Xcc-8004.3228.1 0.79 +0.6 3,138,340 - Xcc-8004.3228.1 0.79 -0.4 3,138,476 + -0.4 3,138,571 + +1.3 3,138,571 + +0.8 3,138,577 + +0.6 3,138,577 + +0.1 3,138,577 + +0.1 3,138,577 + -0.1 3,138,577 + -0.3 3,138,578 - -0.3 3,138,578 - +0.7 3,138,578 - +0.9 3,138,588 + +0.2 3,138,589 - +1.6 3,138,589 - -0.6 3,138,726 + Xcc-8004.3230.1 0.27 +0.9 3,138,727 - Xcc-8004.3230.1 0.27 -0.1 3,139,052 + Xcc-8004.3230.1 0.84 -0.1 3,139,052 + Xcc-8004.3230.1 0.84 -0.7 3,139,052 + Xcc-8004.3230.1 0.84 +0.9 3,139,052 + Xcc-8004.3230.1 0.84 +0.9 3,139,052 + Xcc-8004.3230.1 0.84 -1.9 3,139,099 + -0.3 3,139,099 + -1.6 3,139,099 + -0.7 3,139,100 - -0.6 3,139,100 - +4.5 3,139,101 + -0.8 3,139,102 - -1.6 3,139,102 - -0.3 3,139,121 + -2.9 3,139,121 + +2.9 3,139,122 - +3.9 3,139,122 - +0.6 3,139,295 + +0.1 3,139,295 + +0.1 3,139,322 - Xcc-8004.3229.1 0.12 +0.6 3,139,346 + Xcc-8004.3229.1 0.14 -1.0 3,139,346 + Xcc-8004.3229.1 0.14 +2.3 3,139,346 + Xcc-8004.3229.1 0.14 +0.4 3,139,346 + Xcc-8004.3229.1 0.14 +0.7 3,139,346 + Xcc-8004.3229.1 0.14 -1.9 3,139,346 + Xcc-8004.3229.1 0.14 -1.7 3,139,347 - Xcc-8004.3229.1 0.15 +2.1 3,139,347 - Xcc-8004.3229.1 0.15 -1.6 3,139,415 + Xcc-8004.3229.1 0.21 +1.4 3,139,415 + Xcc-8004.3229.1 0.21 -0.3 3,139,416 - Xcc-8004.3229.1 0.21 -1.6 3,139,416 - Xcc-8004.3229.1 0.21 -0.5 3,139,441 - Xcc-8004.3229.1 0.23 +1.2 3,139,441 - Xcc-8004.3229.1 0.23 -1.4 3,139,441 - Xcc-8004.3229.1 0.23 -1.3 3,139,441 - Xcc-8004.3229.1 0.23 -0.1 3,139,472 + Xcc-8004.3229.1 0.26 +0.9 3,139,472 + Xcc-8004.3229.1 0.26 -1.3 3,139,472 + Xcc-8004.3229.1 0.26 -0.6 3,139,472 + Xcc-8004.3229.1 0.26 -0.9 3,139,472 + Xcc-8004.3229.1 0.26 -1.6 3,139,473 - Xcc-8004.3229.1 0.26 +0.5 3,139,473 - Xcc-8004.3229.1 0.26 +0.4 3,139,473 - Xcc-8004.3229.1 0.26 -1.8 3,139,473 - Xcc-8004.3229.1 0.26 -0.5 3,139,473 - Xcc-8004.3229.1 0.26 +0.1 3,139,485 + Xcc-8004.3229.1 0.27 -1.2 3,139,570 + Xcc-8004.3229.1 0.35 -0.3 3,139,570 + Xcc-8004.3229.1 0.35 -1.3 3,139,570 + Xcc-8004.3229.1 0.35 -2.6 3,139,570 + Xcc-8004.3229.1 0.35 -1.0 3,139,570 + Xcc-8004.3229.1 0.35 -0.1 3,139,571 - Xcc-8004.3229.1 0.35 -1.7 3,139,571 - Xcc-8004.3229.1 0.35 -2.3 3,139,571 - Xcc-8004.3229.1 0.35 -2.6 3,139,590 - Xcc-8004.3229.1 0.37 -0.5 3,139,616 - Xcc-8004.3229.1 0.40 -0.8 3,139,616 - Xcc-8004.3229.1 0.40 -1.9 3,139,676 - Xcc-8004.3229.1 0.45 -0.5 3,139,694 + Xcc-8004.3229.1 0.47 +2.2 3,139,694 + Xcc-8004.3229.1 0.47 +0.6 3,139,703 + Xcc-8004.3229.1 0.48 +1.7 3,139,704 - Xcc-8004.3229.1 0.48 -2.0 3,139,729 + Xcc-8004.3229.1 0.50 -0.1 3,139,729 + Xcc-8004.3229.1 0.50 -2.5 3,139,729 + Xcc-8004.3229.1 0.50 -1.3 3,139,729 + Xcc-8004.3229.1 0.50 -0.3 3,139,729 + Xcc-8004.3229.1 0.50 +0.7 3,139,729 + Xcc-8004.3229.1 0.50 -0.4 3,139,730 - Xcc-8004.3229.1 0.50 +0.3 3,139,868 + Xcc-8004.3229.1 0.63 -0.9 3,139,868 + Xcc-8004.3229.1 0.63 +0.8 3,139,869 - Xcc-8004.3229.1 0.63 -0.1 3,139,883 + Xcc-8004.3229.1 0.65 -1.1 3,139,883 + Xcc-8004.3229.1 0.65 +0.4 3,139,884 - Xcc-8004.3229.1 0.65 -0.2 3,140,048 + Xcc-8004.3229.1 0.80 -1.7 3,140,048 + Xcc-8004.3229.1 0.80 +0.8 3,140,077 + Xcc-8004.3229.1 0.83 -0.3 3,140,077 + Xcc-8004.3229.1 0.83 +2.2 3,140,078 - Xcc-8004.3229.1 0.83 +0.2 3,140,078 - Xcc-8004.3229.1 0.83 +0.5 3,140,078 - Xcc-8004.3229.1 0.83 +0.6 3,140,078 - Xcc-8004.3229.1 0.83 -1.0 3,140,175 + -1.1 3,140,211 - -0.9 3,140,211 - +1.7 3,140,251 + +0.4 3,140,251 + -1.4 3,140,251 + +0.6 3,140,251 + +0.3 3,140,252 - -0.7 3,140,252 - -0.9 3,140,252 - -1.7 3,140,292 + +0.2 3,140,510 + +0.6 3,140,510 + +0.7 3,140,511 - +0.3 3,140,557 - +0.6 3,140,608 + Xcc-8004.3231.1 0.21 +0.6 3,140,608 + Xcc-8004.3231.1 0.21 -0.2 3,140,609 - Xcc-8004.3231.1 0.21 +1.6 3,140,657 + Xcc-8004.3231.1 0.32 +0.8 3,140,658 - Xcc-8004.3231.1 0.32 -2.0 3,140,791 + Xcc-8004.3231.1 0.63 +1.1 3,140,854 - Xcc-8004.3231.1 0.77 +0.1 3,140,925 - -1.8 3,140,925 - +0.0 3,140,925 - -0.2 3,140,935 - +0.2 3,140,935 - -0.3
Or see this region's nucleotide sequence