Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3162.1 and Xcc-8004.3163.1 overlap by 66 nucleotides Xcc-8004.3163.1 and Xcc-8004.3164.1 are separated by 25 nucleotides
Xcc-8004.3162.1: Xcc-8004.3162.1 - FIG01211092: hypothetical protein, at 3,081,177 to 3,082,265
Xcc-8004.3162.1
Xcc-8004.3163.1: Xcc-8004.3163.1 - Radical SAM domain protein, at 3,082,200 to 3,083,969
Xcc-8004.3163.1
Xcc-8004.3164.1: Xcc-8004.3164.1 - FIG01211473: hypothetical protein, at 3,083,995 to 3,085,236
Xcc-8004.3164.1
Position (kb) 3082
3083
3084 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3081.268 kb on + strand at 3081.270 kb on + strand at 3081.271 kb on - strand at 3081.271 kb on - strand at 3081.328 kb on + strand, within Xcc-8004.3162.1 at 3081.329 kb on - strand, within Xcc-8004.3162.1 at 3081.835 kb on + strand, within Xcc-8004.3162.1 at 3081.836 kb on - strand, within Xcc-8004.3162.1 at 3081.904 kb on + strand, within Xcc-8004.3162.1 at 3081.904 kb on + strand, within Xcc-8004.3162.1 at 3081.904 kb on + strand, within Xcc-8004.3162.1 at 3082.017 kb on - strand, within Xcc-8004.3162.1 at 3082.064 kb on - strand, within Xcc-8004.3162.1 at 3082.128 kb on + strand, within Xcc-8004.3162.1 at 3082.128 kb on + strand, within Xcc-8004.3162.1 at 3082.490 kb on - strand, within Xcc-8004.3163.1 at 3082.513 kb on - strand, within Xcc-8004.3163.1 at 3082.513 kb on - strand, within Xcc-8004.3163.1 at 3082.701 kb on + strand, within Xcc-8004.3163.1 at 3082.884 kb on - strand, within Xcc-8004.3163.1 at 3083.104 kb on - strand, within Xcc-8004.3163.1 at 3083.184 kb on + strand, within Xcc-8004.3163.1 at 3083.184 kb on + strand, within Xcc-8004.3163.1 at 3083.185 kb on - strand, within Xcc-8004.3163.1 at 3083.288 kb on + strand, within Xcc-8004.3163.1 at 3083.458 kb on + strand, within Xcc-8004.3163.1 at 3083.459 kb on - strand, within Xcc-8004.3163.1 at 3083.459 kb on - strand, within Xcc-8004.3163.1 at 3083.459 kb on - strand, within Xcc-8004.3163.1 at 3083.559 kb on + strand, within Xcc-8004.3163.1 at 3083.560 kb on - strand, within Xcc-8004.3163.1 at 3083.560 kb on - strand, within Xcc-8004.3163.1 at 3083.752 kb on - strand, within Xcc-8004.3163.1 at 3083.752 kb on - strand, within Xcc-8004.3163.1 at 3083.767 kb on - strand, within Xcc-8004.3163.1 at 3083.841 kb on + strand at 3083.999 kb on + strand at 3083.999 kb on + strand at 3083.999 kb on + strand at 3083.999 kb on + strand at 3084.401 kb on + strand, within Xcc-8004.3164.1 at 3084.401 kb on + strand, within Xcc-8004.3164.1 at 3084.402 kb on - strand, within Xcc-8004.3164.1 at 3084.402 kb on - strand, within Xcc-8004.3164.1 at 3084.408 kb on - strand, within Xcc-8004.3164.1 at 3084.457 kb on + strand, within Xcc-8004.3164.1 at 3084.458 kb on - strand, within Xcc-8004.3164.1 at 3084.458 kb on - strand, within Xcc-8004.3164.1 at 3084.620 kb on + strand, within Xcc-8004.3164.1 at 3084.857 kb on - strand, within Xcc-8004.3164.1 at 3084.859 kb on + strand, within Xcc-8004.3164.1 at 3084.859 kb on + strand, within Xcc-8004.3164.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,081,268 + +0.7 3,081,270 + -0.8 3,081,271 - -2.2 3,081,271 - +2.0 3,081,328 + Xcc-8004.3162.1 0.14 -2.1 3,081,329 - Xcc-8004.3162.1 0.14 -1.8 3,081,835 + Xcc-8004.3162.1 0.60 -0.1 3,081,836 - Xcc-8004.3162.1 0.61 +1.4 3,081,904 + Xcc-8004.3162.1 0.67 -0.1 3,081,904 + Xcc-8004.3162.1 0.67 -1.2 3,081,904 + Xcc-8004.3162.1 0.67 -1.6 3,082,017 - Xcc-8004.3162.1 0.77 -0.9 3,082,064 - Xcc-8004.3162.1 0.81 +0.6 3,082,128 + Xcc-8004.3162.1 0.87 +0.4 3,082,128 + Xcc-8004.3162.1 0.87 +1.1 3,082,490 - Xcc-8004.3163.1 0.16 -1.9 3,082,513 - Xcc-8004.3163.1 0.18 -1.4 3,082,513 - Xcc-8004.3163.1 0.18 +0.4 3,082,701 + Xcc-8004.3163.1 0.28 +0.6 3,082,884 - Xcc-8004.3163.1 0.39 +0.8 3,083,104 - Xcc-8004.3163.1 0.51 -1.0 3,083,184 + Xcc-8004.3163.1 0.56 -0.3 3,083,184 + Xcc-8004.3163.1 0.56 -1.0 3,083,185 - Xcc-8004.3163.1 0.56 -1.5 3,083,288 + Xcc-8004.3163.1 0.61 -1.6 3,083,458 + Xcc-8004.3163.1 0.71 +0.0 3,083,459 - Xcc-8004.3163.1 0.71 -0.9 3,083,459 - Xcc-8004.3163.1 0.71 +0.3 3,083,459 - Xcc-8004.3163.1 0.71 -0.2 3,083,559 + Xcc-8004.3163.1 0.77 +1.0 3,083,560 - Xcc-8004.3163.1 0.77 -2.8 3,083,560 - Xcc-8004.3163.1 0.77 +0.9 3,083,752 - Xcc-8004.3163.1 0.88 -0.3 3,083,752 - Xcc-8004.3163.1 0.88 +0.5 3,083,767 - Xcc-8004.3163.1 0.89 -1.9 3,083,841 + -0.5 3,083,999 + +0.4 3,083,999 + +0.6 3,083,999 + -1.3 3,083,999 + -0.1 3,084,401 + Xcc-8004.3164.1 0.33 +2.9 3,084,401 + Xcc-8004.3164.1 0.33 -1.4 3,084,402 - Xcc-8004.3164.1 0.33 -1.6 3,084,402 - Xcc-8004.3164.1 0.33 +0.4 3,084,408 - Xcc-8004.3164.1 0.33 +1.1 3,084,457 + Xcc-8004.3164.1 0.37 -0.5 3,084,458 - Xcc-8004.3164.1 0.37 +0.3 3,084,458 - Xcc-8004.3164.1 0.37 -0.9 3,084,620 + Xcc-8004.3164.1 0.50 -0.1 3,084,857 - Xcc-8004.3164.1 0.69 +0.3 3,084,859 + Xcc-8004.3164.1 0.70 -2.2 3,084,859 + Xcc-8004.3164.1 0.70 -0.1
Or see this region's nucleotide sequence