Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.252.1 and Xcc-8004.253.1 are separated by 744 nucleotides Xcc-8004.253.1 and Xcc-8004.254.1 are separated by 28 nucleotides Xcc-8004.254.1 and Xcc-8004.255.1 are separated by 48 nucleotides
Xcc-8004.252.1: Xcc-8004.252.1 - Nitrogen regulation protein NtrC, at 246,701 to 248,131
Xcc-8004.252.1
Xcc-8004.253.1: Xcc-8004.253.1 - IcmF-related protein, at 248,876 to 249,256
Xcc-8004.253.1
Xcc-8004.254.1: Xcc-8004.254.1 - Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1), at 249,285 to 249,887
Xcc-8004.254.1
Xcc-8004.255.1: Xcc-8004.255.1 - Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1), at 249,936 to 250,583
Xcc-8004.255.1
Position (kb) 248
249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.135 kb on - strand at 248.202 kb on + strand at 248.202 kb on + strand at 248.202 kb on + strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.435 kb on + strand at 248.524 kb on - strand at 248.615 kb on - strand at 248.629 kb on + strand at 248.629 kb on + strand at 248.629 kb on + strand at 248.630 kb on - strand at 248.631 kb on + strand at 248.631 kb on + strand at 248.631 kb on + strand at 248.631 kb on + strand at 248.632 kb on - strand at 248.636 kb on + strand at 248.637 kb on + strand at 248.637 kb on + strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.646 kb on - strand at 248.702 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.887 kb on - strand at 248.887 kb on - strand at 248.930 kb on + strand, within Xcc-8004.253.1 at 248.931 kb on - strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.976 kb on - strand, within Xcc-8004.253.1 at 248.976 kb on - strand, within Xcc-8004.253.1 at 249.200 kb on - strand, within Xcc-8004.253.1 at 249.200 kb on - strand, within Xcc-8004.253.1 at 249.200 kb on - strand, within Xcc-8004.253.1 at 249.254 kb on + strand at 249.255 kb on - strand at 249.318 kb on - strand at 249.722 kb on + strand, within Xcc-8004.254.1 at 249.723 kb on - strand, within Xcc-8004.254.1 at 249.754 kb on + strand, within Xcc-8004.254.1 at 249.754 kb on + strand, within Xcc-8004.254.1 at 249.754 kb on + strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.755 kb on - strand, within Xcc-8004.254.1 at 249.942 kb on - strand at 249.942 kb on - strand at 249.942 kb on - strand at 249.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 248,134 + -1.6 248,134 + +1.4 248,134 + +1.0 248,134 + -2.8 248,134 + -1.6 248,134 + -1.3 248,134 + +0.5 248,135 - +1.2 248,202 + -1.5 248,202 + -0.8 248,202 + -0.2 248,203 - +0.2 248,203 - +1.8 248,203 - -1.8 248,203 - +1.8 248,203 - -2.8 248,203 - -1.1 248,385 + +1.0 248,385 + +0.8 248,385 + -2.0 248,385 + +0.3 248,385 + +1.4 248,385 + +0.1 248,385 + -0.3 248,385 + +0.3 248,385 + -2.5 248,385 + -0.9 248,385 + +0.5 248,385 + -1.0 248,385 + -1.1 248,386 - +1.0 248,386 - +1.2 248,386 - +0.6 248,386 - -2.2 248,386 - -2.6 248,386 - -0.7 248,386 - -1.0 248,386 - +0.4 248,386 - -1.2 248,386 - -0.4 248,386 - -2.6 248,435 + +0.0 248,524 - +0.7 248,615 - -1.0 248,629 + -0.6 248,629 + +0.2 248,629 + -0.1 248,630 - -0.3 248,631 + -0.7 248,631 + +0.9 248,631 + -1.0 248,631 + +0.8 248,632 - +0.2 248,636 + +1.7 248,637 + +1.0 248,637 + -0.1 248,638 - -0.9 248,638 - +2.5 248,638 - +0.2 248,638 - -0.7 248,638 - -1.2 248,638 - +0.9 248,638 - +0.2 248,646 - -1.6 248,702 + +1.5 248,886 + -1.4 248,886 + -0.0 248,886 + +2.4 248,886 + -1.8 248,886 + -0.2 248,886 + -0.6 248,887 - -0.2 248,887 - +0.8 248,930 + Xcc-8004.253.1 0.14 +0.3 248,931 - Xcc-8004.253.1 0.14 -2.6 248,975 + Xcc-8004.253.1 0.26 -0.6 248,975 + Xcc-8004.253.1 0.26 +0.4 248,975 + Xcc-8004.253.1 0.26 -2.8 248,975 + Xcc-8004.253.1 0.26 -3.7 248,975 + Xcc-8004.253.1 0.26 +1.2 248,975 + Xcc-8004.253.1 0.26 +0.0 248,975 + Xcc-8004.253.1 0.26 -1.0 248,976 - Xcc-8004.253.1 0.26 -1.9 248,976 - Xcc-8004.253.1 0.26 +0.9 249,200 - Xcc-8004.253.1 0.85 +0.2 249,200 - Xcc-8004.253.1 0.85 -1.2 249,200 - Xcc-8004.253.1 0.85 -2.7 249,254 + -1.4 249,255 - -1.7 249,318 - -1.0 249,722 + Xcc-8004.254.1 0.72 +0.7 249,723 - Xcc-8004.254.1 0.73 -0.4 249,754 + Xcc-8004.254.1 0.78 -0.1 249,754 + Xcc-8004.254.1 0.78 -1.7 249,754 + Xcc-8004.254.1 0.78 -1.1 249,755 - Xcc-8004.254.1 0.78 -0.2 249,755 - Xcc-8004.254.1 0.78 -1.0 249,755 - Xcc-8004.254.1 0.78 -0.2 249,755 - Xcc-8004.254.1 0.78 +0.8 249,755 - Xcc-8004.254.1 0.78 +0.9 249,755 - Xcc-8004.254.1 0.78 +2.2 249,755 - Xcc-8004.254.1 0.78 +0.2 249,755 - Xcc-8004.254.1 0.78 +0.8 249,942 - -2.0 249,942 - -0.9 249,942 - -0.4 249,942 - -0.9
Or see this region's nucleotide sequence