Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.237.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.235.1 and Xcc-8004.236.1 are separated by 116 nucleotidesXcc-8004.236.1 and Xcc-8004.237.1 are separated by 54 nucleotidesXcc-8004.237.1 and Xcc-8004.238.1 are separated by 57 nucleotides Xcc-8004.235.1: Xcc-8004.235.1 - ComA operon protein 2, at 232,923 to 233,351 Xcc-8004.235.1 Xcc-8004.236.1: Xcc-8004.236.1 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 233,468 to 234,271 Xcc-8004.236.1 Xcc-8004.237.1: Xcc-8004.237.1 - FIG01211085: hypothetical protein, at 234,326 to 235,312 Xcc-8004.237.1 Xcc-8004.238.1: Xcc-8004.238.1 - Adenylate cyclase (EC 4.6.1.1), at 235,370 to 237,442 Xcc-8004.238.1 Position (kb) 234 235 236Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 233.428 kb on + strandat 233.428 kb on + strandat 233.428 kb on + strandat 233.428 kb on + strandat 233.428 kb on + strandat 233.428 kb on + strandat 233.428 kb on + strandat 233.429 kb on - strandat 233.429 kb on - strandat 233.429 kb on - strandat 233.528 kb on + strandat 233.529 kb on - strandat 233.529 kb on - strandat 234.133 kb on + strand, within Xcc-8004.236.1at 234.133 kb on + strand, within Xcc-8004.236.1at 234.134 kb on - strand, within Xcc-8004.236.1at 234.134 kb on - strand, within Xcc-8004.236.1at 234.342 kb on - strandat 234.342 kb on - strandat 234.342 kb on - strandat 234.342 kb on - strandat 234.364 kb on + strandat 234.364 kb on + strandat 234.365 kb on - strandat 234.535 kb on + strand, within Xcc-8004.237.1at 234.535 kb on + strand, within Xcc-8004.237.1at 234.535 kb on + strand, within Xcc-8004.237.1at 234.535 kb on + strand, within Xcc-8004.237.1at 234.536 kb on - strand, within Xcc-8004.237.1at 234.581 kb on + strand, within Xcc-8004.237.1at 234.581 kb on + strand, within Xcc-8004.237.1at 234.581 kb on + strand, within Xcc-8004.237.1at 234.581 kb on + strand, within Xcc-8004.237.1at 234.581 kb on + strand, within Xcc-8004.237.1at 234.581 kb on + strand, within Xcc-8004.237.1at 234.581 kb on + strand, within Xcc-8004.237.1at 234.581 kb on + strand, within Xcc-8004.237.1at 234.581 kb on + strand, within Xcc-8004.237.1at 234.581 kb on + strand, within Xcc-8004.237.1at 234.581 kb on + strand, within Xcc-8004.237.1at 234.581 kb on + strand, within Xcc-8004.237.1at 234.581 kb on + strand, within Xcc-8004.237.1at 234.582 kb on - strand, within Xcc-8004.237.1at 234.582 kb on - strand, within Xcc-8004.237.1at 234.582 kb on - strand, within Xcc-8004.237.1at 234.582 kb on - strand, within Xcc-8004.237.1at 234.582 kb on - strand, within Xcc-8004.237.1at 234.582 kb on - strand, within Xcc-8004.237.1at 234.582 kb on - strand, within Xcc-8004.237.1at 234.582 kb on - strand, within Xcc-8004.237.1at 234.582 kb on - strand, within Xcc-8004.237.1at 234.582 kb on - strand, within Xcc-8004.237.1at 234.582 kb on - strand, within Xcc-8004.237.1at 234.582 kb on - strand, within Xcc-8004.237.1at 234.621 kb on - strand, within Xcc-8004.237.1at 234.770 kb on + strand, within Xcc-8004.237.1at 234.911 kb on + strand, within Xcc-8004.237.1at 234.911 kb on + strand, within Xcc-8004.237.1at 234.911 kb on + strand, within Xcc-8004.237.1at 234.911 kb on + strand, within Xcc-8004.237.1at 234.911 kb on + strand, within Xcc-8004.237.1at 234.912 kb on - strand, within Xcc-8004.237.1at 234.912 kb on - strand, within Xcc-8004.237.1at 234.912 kb on - strand, within Xcc-8004.237.1at 234.912 kb on - strand, within Xcc-8004.237.1at 234.912 kb on - strand, within Xcc-8004.237.1at 234.920 kb on + strand, within Xcc-8004.237.1at 234.920 kb on + strand, within Xcc-8004.237.1at 234.920 kb on + strand, within Xcc-8004.237.1at 234.920 kb on + strand, within Xcc-8004.237.1at 234.920 kb on + strand, within Xcc-8004.237.1at 234.920 kb on + strand, within Xcc-8004.237.1at 234.920 kb on + strand, within Xcc-8004.237.1at 234.921 kb on - strand, within Xcc-8004.237.1at 234.921 kb on - strand, within Xcc-8004.237.1at 234.951 kb on + strand, within Xcc-8004.237.1at 234.986 kb on + strand, within Xcc-8004.237.1at 234.986 kb on + strand, within Xcc-8004.237.1at 234.987 kb on - strand, within Xcc-8004.237.1at 235.073 kb on + strand, within Xcc-8004.237.1at 235.073 kb on + strand, within Xcc-8004.237.1at 235.073 kb on + strand, within Xcc-8004.237.1at 235.073 kb on + strand, within Xcc-8004.237.1at 235.073 kb on + strand, within Xcc-8004.237.1at 235.073 kb on + strand, within Xcc-8004.237.1at 235.074 kb on - strand, within Xcc-8004.237.1at 235.074 kb on - strand, within Xcc-8004.237.1at 235.074 kb on - strand, within Xcc-8004.237.1at 235.074 kb on - strand, within Xcc-8004.237.1at 235.085 kb on + strand, within Xcc-8004.237.1at 235.085 kb on + strand, within Xcc-8004.237.1at 235.085 kb on + strand, within Xcc-8004.237.1at 235.085 kb on + strand, within Xcc-8004.237.1at 235.085 kb on + strand, within Xcc-8004.237.1at 235.085 kb on + strand, within Xcc-8004.237.1at 235.085 kb on + strand, within Xcc-8004.237.1at 235.085 kb on + strand, within Xcc-8004.237.1at 235.085 kb on + strand, within Xcc-8004.237.1at 235.085 kb on + strand, within Xcc-8004.237.1at 235.086 kb on - strand, within Xcc-8004.237.1at 235.086 kb on - strand, within Xcc-8004.237.1at 235.086 kb on - strand, within Xcc-8004.237.1at 235.086 kb on - strand, within Xcc-8004.237.1at 235.086 kb on - strand, within Xcc-8004.237.1at 235.086 kb on - strand, within Xcc-8004.237.1at 235.086 kb on - strand, within Xcc-8004.237.1at 235.086 kb on - strand, within Xcc-8004.237.1at 235.086 kb on - strand, within Xcc-8004.237.1at 235.086 kb on - strand, within Xcc-8004.237.1at 235.086 kb on - strand, within Xcc-8004.237.1at 235.086 kb on - strand, within Xcc-8004.237.1at 235.086 kb on - strand, within Xcc-8004.237.1at 235.310 kb on + strandat 235.310 kb on + strandat 235.336 kb on + strandat 235.336 kb on + strandat 235.336 kb on + strandat 235.337 kb on - strandat 235.337 kb on - strandat 235.337 kb on - strandat 235.337 kb on - strandat 235.337 kb on - strandat 235.337 kb on - strandat 235.337 kb on - strandat 235.341 kb on + strandat 235.341 kb on + strandat 235.341 kb on + strandat 235.341 kb on + strandat 235.341 kb on + strandat 235.676 kb on + strand, within Xcc-8004.238.1at 235.676 kb on + strand, within Xcc-8004.238.1at 235.676 kb on + strand, within Xcc-8004.238.1at 235.676 kb on + strand, within Xcc-8004.238.1at 235.676 kb on + strand, within Xcc-8004.238.1at 235.676 kb on + strand, within Xcc-8004.238.1at 235.676 kb on + strand, within Xcc-8004.238.1at 235.676 kb on + strand, within Xcc-8004.238.1at 235.676 kb on + strand, within Xcc-8004.238.1at 235.676 kb on + strand, within Xcc-8004.238.1at 235.677 kb on - strand, within Xcc-8004.238.1at 235.677 kb on - strand, within Xcc-8004.238.1at 235.677 kb on - strand, within Xcc-8004.238.1at 235.677 kb on - strand, within Xcc-8004.238.1at 235.677 kb on - strand, within Xcc-8004.238.1at 235.677 kb on - strand, within Xcc-8004.238.1at 235.776 kb on + strand, within Xcc-8004.238.1at 235.777 kb on - strand, within Xcc-8004.238.1at 235.777 kb on - strand, within Xcc-8004.238.1at 235.777 kb on - strand, within Xcc-8004.238.1at 235.777 kb on - strand, within Xcc-8004.238.1at 235.901 kb on + strand, within Xcc-8004.238.1at 235.902 kb on - strand, within Xcc-8004.238.1at 235.902 kb on - strand, within Xcc-8004.238.1at 235.902 kb on - strand, within Xcc-8004.238.1at 235.902 kb on - strand, within Xcc-8004.238.1at 235.902 kb on - strand, within Xcc-8004.238.1at 235.902 kb on - strand, within Xcc-8004.238.1at 235.902 kb on - strand, within Xcc-8004.238.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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233,428 + -1.0
233,428 + -2.5
233,428 + +1.6
233,428 + -0.8
233,428 + -0.6
233,428 + +5.0
233,428 + +3.3
233,429 - +0.6
233,429 - -0.0
233,429 - -0.6
233,528 + +1.4
233,529 - +2.7
233,529 - +0.5
234,133 + Xcc-8004.236.1 0.83 -0.1
234,133 + Xcc-8004.236.1 0.83 -0.8
234,134 - Xcc-8004.236.1 0.83 -1.5
234,134 - Xcc-8004.236.1 0.83 -2.2
234,342 - +1.5
234,342 - +0.4
234,342 - -2.0
234,342 - -1.6
234,364 + -0.3
234,364 + +1.7
234,365 - -0.9
234,535 + Xcc-8004.237.1 0.21 -1.3
234,535 + Xcc-8004.237.1 0.21 -0.5
234,535 + Xcc-8004.237.1 0.21 +0.8
234,535 + Xcc-8004.237.1 0.21 -0.9
234,536 - Xcc-8004.237.1 0.21 -0.6
234,581 + Xcc-8004.237.1 0.26 -0.2
234,581 + Xcc-8004.237.1 0.26 +0.2
234,581 + Xcc-8004.237.1 0.26 +0.3
234,581 + Xcc-8004.237.1 0.26 +2.4
234,581 + Xcc-8004.237.1 0.26 -0.3
234,581 + Xcc-8004.237.1 0.26 -0.1
234,581 + Xcc-8004.237.1 0.26 +0.8
234,581 + Xcc-8004.237.1 0.26 -2.5
234,581 + Xcc-8004.237.1 0.26 +1.8
234,581 + Xcc-8004.237.1 0.26 +0.2
234,581 + Xcc-8004.237.1 0.26 +0.6
234,581 + Xcc-8004.237.1 0.26 +1.0
234,581 + Xcc-8004.237.1 0.26 -0.4
234,582 - Xcc-8004.237.1 0.26 +4.6
234,582 - Xcc-8004.237.1 0.26 +0.9
234,582 - Xcc-8004.237.1 0.26 -1.9
234,582 - Xcc-8004.237.1 0.26 +0.2
234,582 - Xcc-8004.237.1 0.26 +0.2
234,582 - Xcc-8004.237.1 0.26 +0.2
234,582 - Xcc-8004.237.1 0.26 -0.3
234,582 - Xcc-8004.237.1 0.26 -1.8
234,582 - Xcc-8004.237.1 0.26 -1.7
234,582 - Xcc-8004.237.1 0.26 -0.4
234,582 - Xcc-8004.237.1 0.26 -1.1
234,582 - Xcc-8004.237.1 0.26 -2.3
234,621 - Xcc-8004.237.1 0.30 -2.2
234,770 + Xcc-8004.237.1 0.45 +0.0
234,911 + Xcc-8004.237.1 0.59 -1.6
234,911 + Xcc-8004.237.1 0.59 -1.6
234,911 + Xcc-8004.237.1 0.59 -0.3
234,911 + Xcc-8004.237.1 0.59 -0.9
234,911 + Xcc-8004.237.1 0.59 +0.2
234,912 - Xcc-8004.237.1 0.59 +0.4
234,912 - Xcc-8004.237.1 0.59 -1.6
234,912 - Xcc-8004.237.1 0.59 -1.4
234,912 - Xcc-8004.237.1 0.59 -1.2
234,912 - Xcc-8004.237.1 0.59 +0.4
234,920 + Xcc-8004.237.1 0.60 -2.4
234,920 + Xcc-8004.237.1 0.60 -1.7
234,920 + Xcc-8004.237.1 0.60 -0.9
234,920 + Xcc-8004.237.1 0.60 +1.0
234,920 + Xcc-8004.237.1 0.60 -1.8
234,920 + Xcc-8004.237.1 0.60 +1.7
234,920 + Xcc-8004.237.1 0.60 -0.6
234,921 - Xcc-8004.237.1 0.60 +0.3
234,921 - Xcc-8004.237.1 0.60 +1.4
234,951 + Xcc-8004.237.1 0.63 -1.1
234,986 + Xcc-8004.237.1 0.67 -0.1
234,986 + Xcc-8004.237.1 0.67 -1.2
234,987 - Xcc-8004.237.1 0.67 -0.9
235,073 + Xcc-8004.237.1 0.76 -0.3
235,073 + Xcc-8004.237.1 0.76 +0.0
235,073 + Xcc-8004.237.1 0.76 +0.3
235,073 + Xcc-8004.237.1 0.76 -0.8
235,073 + Xcc-8004.237.1 0.76 +0.6
235,073 + Xcc-8004.237.1 0.76 -2.0
235,074 - Xcc-8004.237.1 0.76 -0.0
235,074 - Xcc-8004.237.1 0.76 +0.4
235,074 - Xcc-8004.237.1 0.76 +0.1
235,074 - Xcc-8004.237.1 0.76 -1.8
235,085 + Xcc-8004.237.1 0.77 +0.7
235,085 + Xcc-8004.237.1 0.77 -0.3
235,085 + Xcc-8004.237.1 0.77 +0.4
235,085 + Xcc-8004.237.1 0.77 -1.2
235,085 + Xcc-8004.237.1 0.77 +0.1
235,085 + Xcc-8004.237.1 0.77 -0.6
235,085 + Xcc-8004.237.1 0.77 -2.7
235,085 + Xcc-8004.237.1 0.77 +0.0
235,085 + Xcc-8004.237.1 0.77 -0.6
235,085 + Xcc-8004.237.1 0.77 +0.6
235,086 - Xcc-8004.237.1 0.77 +0.2
235,086 - Xcc-8004.237.1 0.77 +0.3
235,086 - Xcc-8004.237.1 0.77 -0.0
235,086 - Xcc-8004.237.1 0.77 -0.5
235,086 - Xcc-8004.237.1 0.77 +1.2
235,086 - Xcc-8004.237.1 0.77 -1.2
235,086 - Xcc-8004.237.1 0.77 -1.1
235,086 - Xcc-8004.237.1 0.77 -0.5
235,086 - Xcc-8004.237.1 0.77 -0.5
235,086 - Xcc-8004.237.1 0.77 -0.6
235,086 - Xcc-8004.237.1 0.77 +1.7
235,086 - Xcc-8004.237.1 0.77 -1.2
235,086 - Xcc-8004.237.1 0.77 +1.3
235,310 + -0.3
235,310 + -0.8
235,336 + +0.7
235,336 + -1.4
235,336 + +0.8
235,337 - -0.9
235,337 - -1.4
235,337 - -3.0
235,337 - +1.5
235,337 - -0.4
235,337 - +0.9
235,337 - -2.0
235,341 + +1.6
235,341 + -0.3
235,341 + +2.2
235,341 + +0.3
235,341 + -0.6
235,676 + Xcc-8004.238.1 0.15 -2.1
235,676 + Xcc-8004.238.1 0.15 -0.5
235,676 + Xcc-8004.238.1 0.15 +4.6
235,676 + Xcc-8004.238.1 0.15 -0.8
235,676 + Xcc-8004.238.1 0.15 -1.2
235,676 + Xcc-8004.238.1 0.15 -0.6
235,676 + Xcc-8004.238.1 0.15 -0.1
235,676 + Xcc-8004.238.1 0.15 -0.7
235,676 + Xcc-8004.238.1 0.15 +0.7
235,676 + Xcc-8004.238.1 0.15 -1.7
235,677 - Xcc-8004.238.1 0.15 +0.4
235,677 - Xcc-8004.238.1 0.15 -2.5
235,677 - Xcc-8004.238.1 0.15 +1.2
235,677 - Xcc-8004.238.1 0.15 -0.5
235,677 - Xcc-8004.238.1 0.15 -0.7
235,677 - Xcc-8004.238.1 0.15 -1.2
235,776 + Xcc-8004.238.1 0.20 +1.1
235,777 - Xcc-8004.238.1 0.20 +1.7
235,777 - Xcc-8004.238.1 0.20 -0.3
235,777 - Xcc-8004.238.1 0.20 -0.5
235,777 - Xcc-8004.238.1 0.20 +0.9
235,901 + Xcc-8004.238.1 0.26 -1.3
235,902 - Xcc-8004.238.1 0.26 -2.2
235,902 - Xcc-8004.238.1 0.26 -1.3
235,902 - Xcc-8004.238.1 0.26 +0.9
235,902 - Xcc-8004.238.1 0.26 +1.5
235,902 - Xcc-8004.238.1 0.26 -3.4
235,902 - Xcc-8004.238.1 0.26 +0.3
235,902 - Xcc-8004.238.1 0.26 -0.3

Or see this region's nucleotide sequence