Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.199.1 and Xcc-8004.200.1 are separated by 35 nucleotides Xcc-8004.200.1 and Xcc-8004.201.1 are separated by 36 nucleotides Xcc-8004.201.1 and Xcc-8004.202.1 are separated by 10 nucleotides Xcc-8004.202.1 and Xcc-8004.203.1 overlap by 1 nucleotides
Xcc-8004.199.1: Xcc-8004.199.1 - Xylanase, at 191,917 to 192,972
Xcc-8004.199.1
Xcc-8004.200.1: Xcc-8004.200.1 - 2-keto-4-pentenoate hydratase (EC 4.2.1.80), at 193,008 to 193,934
Xcc-8004.200.1
Xcc-8004.201.1: Xcc-8004.201.1 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 193,971 to 194,969
Xcc-8004.201.1
Xcc-8004.202.1: Xcc-8004.202.1 - TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter, at 194,980 to 195,501
Xcc-8004.202.1
Xcc-8004.203.1: Xcc-8004.203.1 - TRAP-type C4-dicarboxylate transport system, large permease component, at 195,501 to 196,784
Xcc-8004.203.1
Position (kb) 193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 193.052 kb on + strand at 193.251 kb on + strand, within Xcc-8004.200.1 at 193.314 kb on + strand, within Xcc-8004.200.1 at 193.314 kb on + strand, within Xcc-8004.200.1 at 193.314 kb on + strand, within Xcc-8004.200.1 at 193.314 kb on + strand, within Xcc-8004.200.1 at 193.314 kb on + strand, within Xcc-8004.200.1 at 193.314 kb on + strand, within Xcc-8004.200.1 at 193.314 kb on + strand, within Xcc-8004.200.1 at 193.315 kb on - strand, within Xcc-8004.200.1 at 193.315 kb on - strand, within Xcc-8004.200.1 at 193.315 kb on - strand, within Xcc-8004.200.1 at 193.315 kb on - strand, within Xcc-8004.200.1 at 193.315 kb on - strand, within Xcc-8004.200.1 at 193.315 kb on - strand, within Xcc-8004.200.1 at 193.315 kb on - strand, within Xcc-8004.200.1 at 193.403 kb on + strand, within Xcc-8004.200.1 at 193.403 kb on + strand, within Xcc-8004.200.1 at 193.422 kb on + strand, within Xcc-8004.200.1 at 193.422 kb on + strand, within Xcc-8004.200.1 at 193.422 kb on + strand, within Xcc-8004.200.1 at 193.422 kb on + strand, within Xcc-8004.200.1 at 193.422 kb on + strand, within Xcc-8004.200.1 at 193.422 kb on + strand, within Xcc-8004.200.1 at 193.422 kb on + strand, within Xcc-8004.200.1 at 193.423 kb on - strand, within Xcc-8004.200.1 at 193.423 kb on - strand, within Xcc-8004.200.1 at 193.423 kb on - strand, within Xcc-8004.200.1 at 193.455 kb on + strand, within Xcc-8004.200.1 at 193.455 kb on + strand, within Xcc-8004.200.1 at 193.455 kb on + strand, within Xcc-8004.200.1 at 193.455 kb on + strand, within Xcc-8004.200.1 at 193.455 kb on + strand, within Xcc-8004.200.1 at 193.456 kb on - strand, within Xcc-8004.200.1 at 193.456 kb on - strand, within Xcc-8004.200.1 at 193.456 kb on - strand, within Xcc-8004.200.1 at 193.456 kb on - strand, within Xcc-8004.200.1 at 193.456 kb on - strand, within Xcc-8004.200.1 at 193.456 kb on - strand, within Xcc-8004.200.1 at 193.623 kb on - strand, within Xcc-8004.200.1 at 193.623 kb on - strand, within Xcc-8004.200.1 at 193.717 kb on + strand, within Xcc-8004.200.1 at 193.717 kb on + strand, within Xcc-8004.200.1 at 193.717 kb on + strand, within Xcc-8004.200.1 at 193.718 kb on - strand, within Xcc-8004.200.1 at 193.718 kb on - strand, within Xcc-8004.200.1 at 193.718 kb on - strand, within Xcc-8004.200.1 at 193.718 kb on - strand, within Xcc-8004.200.1 at 193.718 kb on - strand, within Xcc-8004.200.1 at 193.764 kb on + strand, within Xcc-8004.200.1 at 193.764 kb on + strand, within Xcc-8004.200.1 at 193.765 kb on - strand, within Xcc-8004.200.1 at 193.856 kb on + strand at 194.103 kb on + strand, within Xcc-8004.201.1 at 194.104 kb on - strand, within Xcc-8004.201.1 at 194.181 kb on + strand, within Xcc-8004.201.1 at 194.181 kb on + strand, within Xcc-8004.201.1 at 194.182 kb on - strand, within Xcc-8004.201.1 at 194.260 kb on - strand, within Xcc-8004.201.1 at 194.260 kb on - strand, within Xcc-8004.201.1 at 194.260 kb on - strand, within Xcc-8004.201.1 at 194.313 kb on + strand, within Xcc-8004.201.1 at 194.313 kb on + strand, within Xcc-8004.201.1 at 194.313 kb on + strand, within Xcc-8004.201.1 at 194.313 kb on + strand, within Xcc-8004.201.1 at 194.313 kb on + strand, within Xcc-8004.201.1 at 194.313 kb on + strand, within Xcc-8004.201.1 at 194.313 kb on + strand, within Xcc-8004.201.1 at 194.314 kb on - strand, within Xcc-8004.201.1 at 194.314 kb on - strand, within Xcc-8004.201.1 at 194.314 kb on - strand, within Xcc-8004.201.1 at 194.314 kb on - strand, within Xcc-8004.201.1 at 194.314 kb on - strand, within Xcc-8004.201.1 at 194.314 kb on - strand, within Xcc-8004.201.1 at 194.418 kb on + strand, within Xcc-8004.201.1 at 194.418 kb on + strand, within Xcc-8004.201.1 at 194.418 kb on + strand, within Xcc-8004.201.1 at 194.418 kb on + strand, within Xcc-8004.201.1 at 194.418 kb on + strand, within Xcc-8004.201.1 at 194.418 kb on + strand, within Xcc-8004.201.1 at 194.418 kb on + strand, within Xcc-8004.201.1 at 194.418 kb on + strand, within Xcc-8004.201.1 at 194.419 kb on - strand, within Xcc-8004.201.1 at 194.419 kb on - strand, within Xcc-8004.201.1 at 194.419 kb on - strand, within Xcc-8004.201.1 at 194.419 kb on - strand, within Xcc-8004.201.1 at 194.419 kb on - strand, within Xcc-8004.201.1 at 194.442 kb on + strand, within Xcc-8004.201.1 at 194.442 kb on + strand, within Xcc-8004.201.1 at 194.443 kb on - strand, within Xcc-8004.201.1 at 194.443 kb on - strand, within Xcc-8004.201.1 at 194.443 kb on - strand, within Xcc-8004.201.1 at 194.443 kb on - strand, within Xcc-8004.201.1 at 194.443 kb on - strand, within Xcc-8004.201.1 at 194.443 kb on - strand, within Xcc-8004.201.1 at 194.443 kb on - strand, within Xcc-8004.201.1 at 194.443 kb on - strand, within Xcc-8004.201.1 at 194.443 kb on - strand, within Xcc-8004.201.1 at 194.689 kb on - strand, within Xcc-8004.201.1 at 194.913 kb on + strand at 194.967 kb on + strand at 194.967 kb on + strand at 194.968 kb on - strand at 195.121 kb on + strand, within Xcc-8004.202.1 at 195.121 kb on + strand, within Xcc-8004.202.1 at 195.122 kb on - strand, within Xcc-8004.202.1 at 195.122 kb on - strand, within Xcc-8004.202.1 at 195.122 kb on - strand, within Xcc-8004.202.1 at 195.213 kb on + strand, within Xcc-8004.202.1 at 195.213 kb on + strand, within Xcc-8004.202.1 at 195.213 kb on + strand, within Xcc-8004.202.1 at 195.213 kb on + strand, within Xcc-8004.202.1 at 195.213 kb on + strand, within Xcc-8004.202.1 at 195.214 kb on - strand, within Xcc-8004.202.1 at 195.214 kb on - strand, within Xcc-8004.202.1 at 195.235 kb on + strand, within Xcc-8004.202.1 at 195.235 kb on + strand, within Xcc-8004.202.1 at 195.235 kb on + strand, within Xcc-8004.202.1 at 195.235 kb on + strand, within Xcc-8004.202.1 at 195.236 kb on - strand, within Xcc-8004.202.1 at 195.236 kb on - strand, within Xcc-8004.202.1 at 195.236 kb on - strand, within Xcc-8004.202.1 at 195.403 kb on + strand, within Xcc-8004.202.1 at 195.403 kb on + strand, within Xcc-8004.202.1 at 195.403 kb on + strand, within Xcc-8004.202.1 at 195.403 kb on + strand, within Xcc-8004.202.1 at 195.404 kb on - strand, within Xcc-8004.202.1 at 195.404 kb on - strand, within Xcc-8004.202.1 at 195.404 kb on - strand, within Xcc-8004.202.1 at 195.451 kb on + strand at 195.451 kb on + strand at 195.451 kb on + strand at 195.451 kb on + strand at 195.452 kb on - strand at 195.452 kb on - strand at 195.452 kb on - strand at 195.452 kb on - strand at 195.452 kb on - strand at 195.452 kb on - strand at 195.452 kb on - strand at 195.452 kb on - strand at 195.452 kb on - strand at 195.452 kb on - strand at 195.452 kb on - strand at 195.564 kb on + strand at 195.564 kb on + strand at 195.564 kb on + strand at 195.600 kb on + strand at 195.600 kb on + strand at 195.600 kb on + strand at 195.600 kb on + strand at 195.601 kb on - strand at 195.683 kb on + strand, within Xcc-8004.203.1 at 195.683 kb on + strand, within Xcc-8004.203.1 at 195.684 kb on - strand, within Xcc-8004.203.1 at 195.900 kb on + strand, within Xcc-8004.203.1 at 195.900 kb on + strand, within Xcc-8004.203.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 193,052 + -1.1 193,251 + Xcc-8004.200.1 0.26 -0.7 193,314 + Xcc-8004.200.1 0.33 -2.5 193,314 + Xcc-8004.200.1 0.33 -1.4 193,314 + Xcc-8004.200.1 0.33 +0.6 193,314 + Xcc-8004.200.1 0.33 +2.0 193,314 + Xcc-8004.200.1 0.33 -1.7 193,314 + Xcc-8004.200.1 0.33 +0.7 193,314 + Xcc-8004.200.1 0.33 -0.0 193,315 - Xcc-8004.200.1 0.33 +0.2 193,315 - Xcc-8004.200.1 0.33 +0.3 193,315 - Xcc-8004.200.1 0.33 -1.4 193,315 - Xcc-8004.200.1 0.33 -3.0 193,315 - Xcc-8004.200.1 0.33 +0.6 193,315 - Xcc-8004.200.1 0.33 -0.6 193,315 - Xcc-8004.200.1 0.33 -1.2 193,403 + Xcc-8004.200.1 0.43 +0.4 193,403 + Xcc-8004.200.1 0.43 +0.4 193,422 + Xcc-8004.200.1 0.45 +0.5 193,422 + Xcc-8004.200.1 0.45 +0.1 193,422 + Xcc-8004.200.1 0.45 +1.4 193,422 + Xcc-8004.200.1 0.45 +0.7 193,422 + Xcc-8004.200.1 0.45 +0.8 193,422 + Xcc-8004.200.1 0.45 -1.3 193,422 + Xcc-8004.200.1 0.45 +0.0 193,423 - Xcc-8004.200.1 0.45 -1.8 193,423 - Xcc-8004.200.1 0.45 +0.9 193,423 - Xcc-8004.200.1 0.45 +0.4 193,455 + Xcc-8004.200.1 0.48 -2.7 193,455 + Xcc-8004.200.1 0.48 +1.3 193,455 + Xcc-8004.200.1 0.48 -1.0 193,455 + Xcc-8004.200.1 0.48 +0.6 193,455 + Xcc-8004.200.1 0.48 +0.3 193,456 - Xcc-8004.200.1 0.48 -1.2 193,456 - Xcc-8004.200.1 0.48 +0.7 193,456 - Xcc-8004.200.1 0.48 +0.3 193,456 - Xcc-8004.200.1 0.48 -0.4 193,456 - Xcc-8004.200.1 0.48 +0.5 193,456 - Xcc-8004.200.1 0.48 -1.7 193,623 - Xcc-8004.200.1 0.66 -2.1 193,623 - Xcc-8004.200.1 0.66 -0.1 193,717 + Xcc-8004.200.1 0.76 -1.8 193,717 + Xcc-8004.200.1 0.76 +1.3 193,717 + Xcc-8004.200.1 0.76 +0.4 193,718 - Xcc-8004.200.1 0.77 +0.6 193,718 - Xcc-8004.200.1 0.77 -1.2 193,718 - Xcc-8004.200.1 0.77 +0.5 193,718 - Xcc-8004.200.1 0.77 -2.0 193,718 - Xcc-8004.200.1 0.77 -2.2 193,764 + Xcc-8004.200.1 0.82 -0.4 193,764 + Xcc-8004.200.1 0.82 +1.5 193,765 - Xcc-8004.200.1 0.82 +0.4 193,856 + -0.6 194,103 + Xcc-8004.201.1 0.13 -2.0 194,104 - Xcc-8004.201.1 0.13 -1.3 194,181 + Xcc-8004.201.1 0.21 +0.1 194,181 + Xcc-8004.201.1 0.21 -0.8 194,182 - Xcc-8004.201.1 0.21 -0.4 194,260 - Xcc-8004.201.1 0.29 -2.3 194,260 - Xcc-8004.201.1 0.29 -0.3 194,260 - Xcc-8004.201.1 0.29 +2.0 194,313 + Xcc-8004.201.1 0.34 -0.4 194,313 + Xcc-8004.201.1 0.34 +0.1 194,313 + Xcc-8004.201.1 0.34 -0.5 194,313 + Xcc-8004.201.1 0.34 -2.1 194,313 + Xcc-8004.201.1 0.34 -0.9 194,313 + Xcc-8004.201.1 0.34 +1.3 194,313 + Xcc-8004.201.1 0.34 -1.1 194,314 - Xcc-8004.201.1 0.34 -0.2 194,314 - Xcc-8004.201.1 0.34 -1.0 194,314 - Xcc-8004.201.1 0.34 -1.2 194,314 - Xcc-8004.201.1 0.34 +2.7 194,314 - Xcc-8004.201.1 0.34 -0.4 194,314 - Xcc-8004.201.1 0.34 -0.1 194,418 + Xcc-8004.201.1 0.45 +0.2 194,418 + Xcc-8004.201.1 0.45 -2.5 194,418 + Xcc-8004.201.1 0.45 -0.2 194,418 + Xcc-8004.201.1 0.45 -0.7 194,418 + Xcc-8004.201.1 0.45 -1.1 194,418 + Xcc-8004.201.1 0.45 +0.7 194,418 + Xcc-8004.201.1 0.45 +0.5 194,418 + Xcc-8004.201.1 0.45 -0.3 194,419 - Xcc-8004.201.1 0.45 +0.6 194,419 - Xcc-8004.201.1 0.45 -0.2 194,419 - Xcc-8004.201.1 0.45 -0.7 194,419 - Xcc-8004.201.1 0.45 -0.3 194,419 - Xcc-8004.201.1 0.45 -0.7 194,442 + Xcc-8004.201.1 0.47 -2.2 194,442 + Xcc-8004.201.1 0.47 +0.6 194,443 - Xcc-8004.201.1 0.47 -2.1 194,443 - Xcc-8004.201.1 0.47 -0.4 194,443 - Xcc-8004.201.1 0.47 +1.1 194,443 - Xcc-8004.201.1 0.47 -0.5 194,443 - Xcc-8004.201.1 0.47 -0.0 194,443 - Xcc-8004.201.1 0.47 +1.5 194,443 - Xcc-8004.201.1 0.47 -0.7 194,443 - Xcc-8004.201.1 0.47 +0.2 194,443 - Xcc-8004.201.1 0.47 -0.8 194,689 - Xcc-8004.201.1 0.72 +1.4 194,913 + -2.3 194,967 + -1.6 194,967 + -0.1 194,968 - +0.5 195,121 + Xcc-8004.202.1 0.27 +0.3 195,121 + Xcc-8004.202.1 0.27 +0.3 195,122 - Xcc-8004.202.1 0.27 +0.1 195,122 - Xcc-8004.202.1 0.27 -0.6 195,122 - Xcc-8004.202.1 0.27 -2.1 195,213 + Xcc-8004.202.1 0.45 +1.0 195,213 + Xcc-8004.202.1 0.45 -1.9 195,213 + Xcc-8004.202.1 0.45 -0.2 195,213 + Xcc-8004.202.1 0.45 -1.0 195,213 + Xcc-8004.202.1 0.45 -0.5 195,214 - Xcc-8004.202.1 0.45 -0.6 195,214 - Xcc-8004.202.1 0.45 -1.2 195,235 + Xcc-8004.202.1 0.49 -1.9 195,235 + Xcc-8004.202.1 0.49 -0.3 195,235 + Xcc-8004.202.1 0.49 -1.2 195,235 + Xcc-8004.202.1 0.49 -0.4 195,236 - Xcc-8004.202.1 0.49 -0.3 195,236 - Xcc-8004.202.1 0.49 +1.3 195,236 - Xcc-8004.202.1 0.49 -1.0 195,403 + Xcc-8004.202.1 0.81 -0.3 195,403 + Xcc-8004.202.1 0.81 -2.3 195,403 + Xcc-8004.202.1 0.81 -1.1 195,403 + Xcc-8004.202.1 0.81 -0.6 195,404 - Xcc-8004.202.1 0.81 +0.1 195,404 - Xcc-8004.202.1 0.81 -3.2 195,404 - Xcc-8004.202.1 0.81 -1.7 195,451 + +0.8 195,451 + +1.9 195,451 + +0.1 195,451 + -0.1 195,452 - +0.4 195,452 - -1.7 195,452 - +0.3 195,452 - -0.5 195,452 - -0.4 195,452 - +1.2 195,452 - +1.0 195,452 - -0.0 195,452 - -3.4 195,452 - -0.0 195,452 - -0.5 195,564 + +0.5 195,564 + -1.0 195,564 + +1.0 195,600 + +0.2 195,600 + -1.2 195,600 + -0.6 195,600 + -0.4 195,601 - -0.1 195,683 + Xcc-8004.203.1 0.14 -0.1 195,683 + Xcc-8004.203.1 0.14 +0.8 195,684 - Xcc-8004.203.1 0.14 +0.9 195,900 + Xcc-8004.203.1 0.31 +0.7 195,900 + Xcc-8004.203.1 0.31 +0.4
Or see this region's nucleotide sequence