Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1481.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1480.1 and Xcc-8004.1481.1 are separated by 251 nucleotidesXcc-8004.1481.1 and Xcc-8004.1482.1 are separated by 106 nucleotides Xcc-8004.1480.1: Xcc-8004.1480.1 - ATP dependent RNA helicase, at 1,404,200 to 1,408,315 Xcc-8004.1480.1 Xcc-8004.1481.1: Xcc-8004.1481.1 - N-acetylglucosamine-regulated TonB-dependent outer membrane receptor, at 1,408,567 to 1,411,203 Xcc-8004.1481.1 Xcc-8004.1482.1: Xcc-8004.1482.1 - predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59), at 1,411,310 to 1,412,344 Xcc-8004.1482.1 Position (kb) 1408 1409 1410 1411 1412Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1407.716 kb on + strand, within Xcc-8004.1480.1at 1407.716 kb on + strand, within Xcc-8004.1480.1at 1407.717 kb on - strand, within Xcc-8004.1480.1at 1407.717 kb on - strand, within Xcc-8004.1480.1at 1407.717 kb on - strand, within Xcc-8004.1480.1at 1407.717 kb on - strand, within Xcc-8004.1480.1at 1407.717 kb on - strand, within Xcc-8004.1480.1at 1407.717 kb on - strand, within Xcc-8004.1480.1at 1407.717 kb on - strand, within Xcc-8004.1480.1at 1407.717 kb on - strand, within Xcc-8004.1480.1at 1407.988 kb on - strandat 1408.046 kb on + strandat 1408.055 kb on + strandat 1408.055 kb on + strandat 1408.236 kb on + strandat 1408.237 kb on - strandat 1408.422 kb on + strandat 1408.422 kb on + strandat 1408.422 kb on + strandat 1408.499 kb on + strandat 1408.499 kb on + strandat 1408.499 kb on + strandat 1408.500 kb on - strandat 1408.500 kb on - strandat 1408.563 kb on + strandat 1408.595 kb on + strandat 1408.613 kb on + strandat 1408.614 kb on - strandat 1408.614 kb on - strandat 1408.655 kb on + strandat 1408.655 kb on + strandat 1408.656 kb on - strandat 1408.779 kb on - strandat 1408.779 kb on - strandat 1408.793 kb on + strandat 1408.811 kb on + strandat 1408.812 kb on - strandat 1408.844 kb on + strand, within Xcc-8004.1481.1at 1408.844 kb on + strand, within Xcc-8004.1481.1at 1408.848 kb on - strand, within Xcc-8004.1481.1at 1408.919 kb on + strand, within Xcc-8004.1481.1at 1408.919 kb on + strand, within Xcc-8004.1481.1at 1408.920 kb on - strand, within Xcc-8004.1481.1at 1408.920 kb on - strand, within Xcc-8004.1481.1at 1408.920 kb on - strand, within Xcc-8004.1481.1at 1408.920 kb on - strand, within Xcc-8004.1481.1at 1408.920 kb on - strand, within Xcc-8004.1481.1at 1408.920 kb on - strand, within Xcc-8004.1481.1at 1408.925 kb on + strand, within Xcc-8004.1481.1at 1408.925 kb on + strand, within Xcc-8004.1481.1at 1408.926 kb on - strand, within Xcc-8004.1481.1at 1409.030 kb on + strand, within Xcc-8004.1481.1at 1409.030 kb on + strand, within Xcc-8004.1481.1at 1409.114 kb on + strand, within Xcc-8004.1481.1at 1409.114 kb on + strand, within Xcc-8004.1481.1at 1409.114 kb on + strand, within Xcc-8004.1481.1at 1409.114 kb on + strand, within Xcc-8004.1481.1at 1409.114 kb on + strand, within Xcc-8004.1481.1at 1409.115 kb on - strand, within Xcc-8004.1481.1at 1409.147 kb on + strand, within Xcc-8004.1481.1at 1409.147 kb on + strand, within Xcc-8004.1481.1at 1409.147 kb on + strand, within Xcc-8004.1481.1at 1409.147 kb on + strand, within Xcc-8004.1481.1at 1409.148 kb on - strand, within Xcc-8004.1481.1at 1409.148 kb on - strand, within Xcc-8004.1481.1at 1409.148 kb on - strand, within Xcc-8004.1481.1at 1409.165 kb on + strand, within Xcc-8004.1481.1at 1409.204 kb on + strand, within Xcc-8004.1481.1at 1409.248 kb on + strand, within Xcc-8004.1481.1at 1409.319 kb on - strand, within Xcc-8004.1481.1at 1409.319 kb on - strand, within Xcc-8004.1481.1at 1409.381 kb on + strand, within Xcc-8004.1481.1at 1409.472 kb on + strand, within Xcc-8004.1481.1at 1409.472 kb on + strand, within Xcc-8004.1481.1at 1409.474 kb on + strand, within Xcc-8004.1481.1at 1409.510 kb on + strand, within Xcc-8004.1481.1at 1409.510 kb on + strand, within Xcc-8004.1481.1at 1409.609 kb on + strand, within Xcc-8004.1481.1at 1409.609 kb on + strand, within Xcc-8004.1481.1at 1409.609 kb on + strand, within Xcc-8004.1481.1at 1409.610 kb on - strand, within Xcc-8004.1481.1at 1409.610 kb on - strand, within Xcc-8004.1481.1at 1409.610 kb on - strand, within Xcc-8004.1481.1at 1409.633 kb on + strand, within Xcc-8004.1481.1at 1409.634 kb on - strand, within Xcc-8004.1481.1at 1409.709 kb on - strand, within Xcc-8004.1481.1at 1409.777 kb on + strand, within Xcc-8004.1481.1at 1409.777 kb on + strand, within Xcc-8004.1481.1at 1409.777 kb on + strand, within Xcc-8004.1481.1at 1409.827 kb on + strand, within Xcc-8004.1481.1at 1409.879 kb on + strand, within Xcc-8004.1481.1at 1409.879 kb on + strand, within Xcc-8004.1481.1at 1409.879 kb on + strand, within Xcc-8004.1481.1at 1409.880 kb on - strand, within Xcc-8004.1481.1at 1410.021 kb on - strand, within Xcc-8004.1481.1at 1410.170 kb on + strand, within Xcc-8004.1481.1at 1410.170 kb on + strand, within Xcc-8004.1481.1at 1410.171 kb on - strand, within Xcc-8004.1481.1at 1410.311 kb on + strand, within Xcc-8004.1481.1at 1410.311 kb on + strand, within Xcc-8004.1481.1at 1410.312 kb on - strand, within Xcc-8004.1481.1at 1410.312 kb on - strand, within Xcc-8004.1481.1at 1410.312 kb on - strand, within Xcc-8004.1481.1at 1410.335 kb on + strand, within Xcc-8004.1481.1at 1410.335 kb on + strand, within Xcc-8004.1481.1at 1410.336 kb on - strand, within Xcc-8004.1481.1at 1410.336 kb on - strand, within Xcc-8004.1481.1at 1410.336 kb on - strand, within Xcc-8004.1481.1at 1410.336 kb on - strand, within Xcc-8004.1481.1at 1410.336 kb on - strand, within Xcc-8004.1481.1at 1410.548 kb on + strand, within Xcc-8004.1481.1at 1410.549 kb on - strand, within Xcc-8004.1481.1at 1410.603 kb on - strand, within Xcc-8004.1481.1at 1410.647 kb on + strand, within Xcc-8004.1481.1at 1410.647 kb on + strand, within Xcc-8004.1481.1at 1410.647 kb on + strand, within Xcc-8004.1481.1at 1410.647 kb on + strand, within Xcc-8004.1481.1at 1410.647 kb on + strand, within Xcc-8004.1481.1at 1410.648 kb on - strand, within Xcc-8004.1481.1at 1410.648 kb on - strand, within Xcc-8004.1481.1at 1410.648 kb on - strand, within Xcc-8004.1481.1at 1410.648 kb on - strand, within Xcc-8004.1481.1at 1410.648 kb on - strand, within Xcc-8004.1481.1at 1410.648 kb on - strand, within Xcc-8004.1481.1at 1410.648 kb on - strand, within Xcc-8004.1481.1at 1410.651 kb on + strand, within Xcc-8004.1481.1at 1410.651 kb on + strand, within Xcc-8004.1481.1at 1410.651 kb on + strand, within Xcc-8004.1481.1at 1410.651 kb on + strand, within Xcc-8004.1481.1at 1410.651 kb on + strand, within Xcc-8004.1481.1at 1410.652 kb on - strand, within Xcc-8004.1481.1at 1410.652 kb on - strand, within Xcc-8004.1481.1at 1410.652 kb on - strand, within Xcc-8004.1481.1at 1410.652 kb on - strand, within Xcc-8004.1481.1at 1410.652 kb on - strand, within Xcc-8004.1481.1at 1410.652 kb on - strand, within Xcc-8004.1481.1at 1410.652 kb on - strand, within Xcc-8004.1481.1at 1410.652 kb on - strand, within Xcc-8004.1481.1at 1410.806 kb on + strand, within Xcc-8004.1481.1at 1411.044 kb on + strandat 1411.044 kb on + strandat 1411.044 kb on + strandat 1411.045 kb on - strandat 1411.045 kb on - strandat 1411.045 kb on - strandat 1411.045 kb on - strandat 1411.197 kb on - strandat 1411.269 kb on + strandat 1411.269 kb on + strandat 1411.311 kb on + strandat 1411.311 kb on + strandat 1411.312 kb on - strandat 1411.312 kb on - strandat 1411.500 kb on + strand, within Xcc-8004.1482.1at 1411.501 kb on - strand, within Xcc-8004.1482.1at 1411.501 kb on - strand, within Xcc-8004.1482.1at 1411.680 kb on + strand, within Xcc-8004.1482.1at 1411.681 kb on - strand, within Xcc-8004.1482.1at 1411.681 kb on - strand, within Xcc-8004.1482.1at 1411.728 kb on + strand, within Xcc-8004.1482.1at 1411.728 kb on + strand, within Xcc-8004.1482.1at 1411.728 kb on + strand, within Xcc-8004.1482.1at 1411.728 kb on + strand, within Xcc-8004.1482.1at 1411.729 kb on - strand, within Xcc-8004.1482.1at 1411.729 kb on - strand, within Xcc-8004.1482.1at 1411.729 kb on - strand, within Xcc-8004.1482.1at 1411.730 kb on - strand, within Xcc-8004.1482.1at 1411.928 kb on + strand, within Xcc-8004.1482.1at 1411.928 kb on + strand, within Xcc-8004.1482.1at 1411.928 kb on + strand, within Xcc-8004.1482.1at 1411.929 kb on - strand, within Xcc-8004.1482.1at 1411.929 kb on - strand, within Xcc-8004.1482.1at 1411.968 kb on + strand, within Xcc-8004.1482.1at 1412.187 kb on + strand, within Xcc-8004.1482.1at 1412.187 kb on + strand, within Xcc-8004.1482.1at 1412.187 kb on + strand, within Xcc-8004.1482.1at 1412.188 kb on - strand, within Xcc-8004.1482.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,407,716 + Xcc-8004.1480.1 0.85 +0.4
1,407,716 + Xcc-8004.1480.1 0.85 -1.0
1,407,717 - Xcc-8004.1480.1 0.85 +0.8
1,407,717 - Xcc-8004.1480.1 0.85 +0.5
1,407,717 - Xcc-8004.1480.1 0.85 -0.9
1,407,717 - Xcc-8004.1480.1 0.85 +0.3
1,407,717 - Xcc-8004.1480.1 0.85 -1.2
1,407,717 - Xcc-8004.1480.1 0.85 -1.0
1,407,717 - Xcc-8004.1480.1 0.85 -1.6
1,407,717 - Xcc-8004.1480.1 0.85 -1.9
1,407,988 - +0.8
1,408,046 + +0.8
1,408,055 + +3.1
1,408,055 + -2.9
1,408,236 + -0.6
1,408,237 - -1.4
1,408,422 + +0.9
1,408,422 + +0.7
1,408,422 + +4.5
1,408,499 + -0.9
1,408,499 + -0.5
1,408,499 + -0.5
1,408,500 - -0.6
1,408,500 - +0.9
1,408,563 + +2.1
1,408,595 + -0.7
1,408,613 + +1.1
1,408,614 - -1.0
1,408,614 - -0.6
1,408,655 + -1.0
1,408,655 + +1.0
1,408,656 - +0.4
1,408,779 - -0.3
1,408,779 - -1.0
1,408,793 + -0.9
1,408,811 + +0.7
1,408,812 - +0.8
1,408,844 + Xcc-8004.1481.1 0.11 +3.1
1,408,844 + Xcc-8004.1481.1 0.11 -0.6
1,408,848 - Xcc-8004.1481.1 0.11 +2.0
1,408,919 + Xcc-8004.1481.1 0.13 +1.5
1,408,919 + Xcc-8004.1481.1 0.13 -0.1
1,408,920 - Xcc-8004.1481.1 0.13 -0.2
1,408,920 - Xcc-8004.1481.1 0.13 +0.2
1,408,920 - Xcc-8004.1481.1 0.13 -2.3
1,408,920 - Xcc-8004.1481.1 0.13 +2.1
1,408,920 - Xcc-8004.1481.1 0.13 +1.2
1,408,920 - Xcc-8004.1481.1 0.13 -0.9
1,408,925 + Xcc-8004.1481.1 0.14 -0.5
1,408,925 + Xcc-8004.1481.1 0.14 -0.4
1,408,926 - Xcc-8004.1481.1 0.14 -0.3
1,409,030 + Xcc-8004.1481.1 0.18 -1.9
1,409,030 + Xcc-8004.1481.1 0.18 -0.5
1,409,114 + Xcc-8004.1481.1 0.21 +0.6
1,409,114 + Xcc-8004.1481.1 0.21 -0.8
1,409,114 + Xcc-8004.1481.1 0.21 -0.3
1,409,114 + Xcc-8004.1481.1 0.21 -0.3
1,409,114 + Xcc-8004.1481.1 0.21 +0.7
1,409,115 - Xcc-8004.1481.1 0.21 -1.8
1,409,147 + Xcc-8004.1481.1 0.22 +0.0
1,409,147 + Xcc-8004.1481.1 0.22 +0.6
1,409,147 + Xcc-8004.1481.1 0.22 -2.4
1,409,147 + Xcc-8004.1481.1 0.22 -2.3
1,409,148 - Xcc-8004.1481.1 0.22 -0.8
1,409,148 - Xcc-8004.1481.1 0.22 -0.3
1,409,148 - Xcc-8004.1481.1 0.22 +2.5
1,409,165 + Xcc-8004.1481.1 0.23 -1.4
1,409,204 + Xcc-8004.1481.1 0.24 +1.4
1,409,248 + Xcc-8004.1481.1 0.26 -0.0
1,409,319 - Xcc-8004.1481.1 0.29 +1.1
1,409,319 - Xcc-8004.1481.1 0.29 -0.6
1,409,381 + Xcc-8004.1481.1 0.31 +2.3
1,409,472 + Xcc-8004.1481.1 0.34 +0.1
1,409,472 + Xcc-8004.1481.1 0.34 +0.5
1,409,474 + Xcc-8004.1481.1 0.34 +0.4
1,409,510 + Xcc-8004.1481.1 0.36 -1.8
1,409,510 + Xcc-8004.1481.1 0.36 +0.4
1,409,609 + Xcc-8004.1481.1 0.40 -0.3
1,409,609 + Xcc-8004.1481.1 0.40 +2.2
1,409,609 + Xcc-8004.1481.1 0.40 -2.0
1,409,610 - Xcc-8004.1481.1 0.40 -1.3
1,409,610 - Xcc-8004.1481.1 0.40 +1.8
1,409,610 - Xcc-8004.1481.1 0.40 -0.6
1,409,633 + Xcc-8004.1481.1 0.40 +1.1
1,409,634 - Xcc-8004.1481.1 0.40 +0.7
1,409,709 - Xcc-8004.1481.1 0.43 +0.4
1,409,777 + Xcc-8004.1481.1 0.46 -0.5
1,409,777 + Xcc-8004.1481.1 0.46 +1.2
1,409,777 + Xcc-8004.1481.1 0.46 -2.3
1,409,827 + Xcc-8004.1481.1 0.48 +1.2
1,409,879 + Xcc-8004.1481.1 0.50 -1.1
1,409,879 + Xcc-8004.1481.1 0.50 +0.8
1,409,879 + Xcc-8004.1481.1 0.50 +0.2
1,409,880 - Xcc-8004.1481.1 0.50 +2.0
1,410,021 - Xcc-8004.1481.1 0.55 -0.4
1,410,170 + Xcc-8004.1481.1 0.61 -0.3
1,410,170 + Xcc-8004.1481.1 0.61 +0.6
1,410,171 - Xcc-8004.1481.1 0.61 +0.4
1,410,311 + Xcc-8004.1481.1 0.66 -1.0
1,410,311 + Xcc-8004.1481.1 0.66 +1.4
1,410,312 - Xcc-8004.1481.1 0.66 +0.1
1,410,312 - Xcc-8004.1481.1 0.66 +0.0
1,410,312 - Xcc-8004.1481.1 0.66 -0.6
1,410,335 + Xcc-8004.1481.1 0.67 -0.8
1,410,335 + Xcc-8004.1481.1 0.67 -1.6
1,410,336 - Xcc-8004.1481.1 0.67 -0.9
1,410,336 - Xcc-8004.1481.1 0.67 +0.0
1,410,336 - Xcc-8004.1481.1 0.67 -0.4
1,410,336 - Xcc-8004.1481.1 0.67 +0.5
1,410,336 - Xcc-8004.1481.1 0.67 -1.5
1,410,548 + Xcc-8004.1481.1 0.75 +1.2
1,410,549 - Xcc-8004.1481.1 0.75 -0.5
1,410,603 - Xcc-8004.1481.1 0.77 -0.4
1,410,647 + Xcc-8004.1481.1 0.79 +1.2
1,410,647 + Xcc-8004.1481.1 0.79 +1.5
1,410,647 + Xcc-8004.1481.1 0.79 -1.4
1,410,647 + Xcc-8004.1481.1 0.79 -0.7
1,410,647 + Xcc-8004.1481.1 0.79 -0.2
1,410,648 - Xcc-8004.1481.1 0.79 -2.6
1,410,648 - Xcc-8004.1481.1 0.79 +0.2
1,410,648 - Xcc-8004.1481.1 0.79 +0.6
1,410,648 - Xcc-8004.1481.1 0.79 -0.4
1,410,648 - Xcc-8004.1481.1 0.79 -1.9
1,410,648 - Xcc-8004.1481.1 0.79 -2.4
1,410,648 - Xcc-8004.1481.1 0.79 +0.8
1,410,651 + Xcc-8004.1481.1 0.79 +1.3
1,410,651 + Xcc-8004.1481.1 0.79 +2.3
1,410,651 + Xcc-8004.1481.1 0.79 -1.6
1,410,651 + Xcc-8004.1481.1 0.79 +0.1
1,410,651 + Xcc-8004.1481.1 0.79 +0.5
1,410,652 - Xcc-8004.1481.1 0.79 -0.4
1,410,652 - Xcc-8004.1481.1 0.79 +1.9
1,410,652 - Xcc-8004.1481.1 0.79 -0.2
1,410,652 - Xcc-8004.1481.1 0.79 +1.6
1,410,652 - Xcc-8004.1481.1 0.79 +0.2
1,410,652 - Xcc-8004.1481.1 0.79 -0.2
1,410,652 - Xcc-8004.1481.1 0.79 -1.9
1,410,652 - Xcc-8004.1481.1 0.79 -0.2
1,410,806 + Xcc-8004.1481.1 0.85 +1.1
1,411,044 + -1.3
1,411,044 + -2.1
1,411,044 + +1.7
1,411,045 - -0.9
1,411,045 - +1.1
1,411,045 - -0.6
1,411,045 - -0.6
1,411,197 - -1.7
1,411,269 + -0.2
1,411,269 + -1.5
1,411,311 + +3.1
1,411,311 + -0.9
1,411,312 - -1.1
1,411,312 - +1.1
1,411,500 + Xcc-8004.1482.1 0.18 +0.5
1,411,501 - Xcc-8004.1482.1 0.18 -0.4
1,411,501 - Xcc-8004.1482.1 0.18 +0.2
1,411,680 + Xcc-8004.1482.1 0.36 -1.5
1,411,681 - Xcc-8004.1482.1 0.36 +2.2
1,411,681 - Xcc-8004.1482.1 0.36 +0.2
1,411,728 + Xcc-8004.1482.1 0.40 +0.2
1,411,728 + Xcc-8004.1482.1 0.40 -0.7
1,411,728 + Xcc-8004.1482.1 0.40 -1.0
1,411,728 + Xcc-8004.1482.1 0.40 -0.2
1,411,729 - Xcc-8004.1482.1 0.40 +0.4
1,411,729 - Xcc-8004.1482.1 0.40 +0.8
1,411,729 - Xcc-8004.1482.1 0.40 -0.1
1,411,730 - Xcc-8004.1482.1 0.41 -2.5
1,411,928 + Xcc-8004.1482.1 0.60 -0.4
1,411,928 + Xcc-8004.1482.1 0.60 -2.4
1,411,928 + Xcc-8004.1482.1 0.60 -0.8
1,411,929 - Xcc-8004.1482.1 0.60 +0.7
1,411,929 - Xcc-8004.1482.1 0.60 +0.6
1,411,968 + Xcc-8004.1482.1 0.64 -2.3
1,412,187 + Xcc-8004.1482.1 0.85 -0.3
1,412,187 + Xcc-8004.1482.1 0.85 -2.2
1,412,187 + Xcc-8004.1482.1 0.85 -0.2
1,412,188 - Xcc-8004.1482.1 0.85 +1.2

Or see this region's nucleotide sequence