Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1432.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1431.1 and Xcc-8004.1432.1 are separated by 347 nucleotidesXcc-8004.1432.1 and Xcc-8004.1433.1 are separated by 124 nucleotidesXcc-8004.1433.1 and Xcc-8004.1434.1 are separated by 75 nucleotides Xcc-8004.1431.1: Xcc-8004.1431.1 - Aspartyl-tRNA synthetase (EC 6.1.1.12), at 1,370,278 to 1,372,044 Xcc-8004.1431.1 Xcc-8004.1432.1: Xcc-8004.1432.1 - acetyltransferase, at 1,372,392 to 1,372,919 Xcc-8004.1432.1 Xcc-8004.1433.1: Xcc-8004.1433.1 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 1,373,044 to 1,373,703 Xcc-8004.1433.1 Xcc-8004.1434.1: Xcc-8004.1434.1 - FIG000859: hypothetical protein YebC, at 1,373,779 to 1,374,507 Xcc-8004.1434.1 Position (kb) 1372 1373Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1372.133 kb on + strandat 1372.133 kb on + strandat 1372.134 kb on - strandat 1372.521 kb on + strand, within Xcc-8004.1432.1at 1372.521 kb on + strand, within Xcc-8004.1432.1at 1372.521 kb on + strand, within Xcc-8004.1432.1at 1372.522 kb on - strand, within Xcc-8004.1432.1at 1372.522 kb on - strand, within Xcc-8004.1432.1at 1372.522 kb on - strand, within Xcc-8004.1432.1at 1372.677 kb on + strand, within Xcc-8004.1432.1at 1372.678 kb on - strand, within Xcc-8004.1432.1at 1372.678 kb on - strand, within Xcc-8004.1432.1at 1372.692 kb on + strand, within Xcc-8004.1432.1at 1372.692 kb on + strand, within Xcc-8004.1432.1at 1372.692 kb on + strand, within Xcc-8004.1432.1at 1372.692 kb on + strand, within Xcc-8004.1432.1at 1372.692 kb on + strand, within Xcc-8004.1432.1at 1372.693 kb on - strand, within Xcc-8004.1432.1at 1372.812 kb on + strand, within Xcc-8004.1432.1at 1372.812 kb on + strand, within Xcc-8004.1432.1at 1372.812 kb on + strand, within Xcc-8004.1432.1at 1372.813 kb on - strand, within Xcc-8004.1432.1at 1372.813 kb on - strand, within Xcc-8004.1432.1at 1372.813 kb on - strand, within Xcc-8004.1432.1at 1372.813 kb on - strand, within Xcc-8004.1432.1at 1372.813 kb on - strand, within Xcc-8004.1432.1at 1372.813 kb on - strand, within Xcc-8004.1432.1at 1372.822 kb on - strand, within Xcc-8004.1432.1at 1372.822 kb on - strand, within Xcc-8004.1432.1at 1372.881 kb on + strandat 1372.881 kb on + strandat 1372.881 kb on + strandat 1372.881 kb on + strandat 1372.881 kb on + strandat 1372.881 kb on + strandat 1372.881 kb on + strandat 1372.882 kb on - strandat 1372.882 kb on - strandat 1372.882 kb on - strandat 1372.917 kb on + strandat 1372.917 kb on + strandat 1372.917 kb on + strandat 1372.918 kb on - strandat 1373.169 kb on + strand, within Xcc-8004.1433.1at 1373.170 kb on - strand, within Xcc-8004.1433.1at 1373.201 kb on - strand, within Xcc-8004.1433.1at 1373.276 kb on + strand, within Xcc-8004.1433.1at 1373.464 kb on - strand, within Xcc-8004.1433.1at 1373.628 kb on + strand, within Xcc-8004.1433.1at 1373.694 kb on + strandat 1373.737 kb on + strandat 1373.784 kb on + strandat 1373.785 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
1,372,133 + +0.2
1,372,133 + -0.2
1,372,134 - +1.6
1,372,521 + Xcc-8004.1432.1 0.24 +1.8
1,372,521 + Xcc-8004.1432.1 0.24 -0.4
1,372,521 + Xcc-8004.1432.1 0.24 +0.5
1,372,522 - Xcc-8004.1432.1 0.25 +1.1
1,372,522 - Xcc-8004.1432.1 0.25 +0.1
1,372,522 - Xcc-8004.1432.1 0.25 -0.2
1,372,677 + Xcc-8004.1432.1 0.54 -1.7
1,372,678 - Xcc-8004.1432.1 0.54 +0.2
1,372,678 - Xcc-8004.1432.1 0.54 +0.2
1,372,692 + Xcc-8004.1432.1 0.57 -1.0
1,372,692 + Xcc-8004.1432.1 0.57 +1.3
1,372,692 + Xcc-8004.1432.1 0.57 +0.4
1,372,692 + Xcc-8004.1432.1 0.57 -0.4
1,372,692 + Xcc-8004.1432.1 0.57 -2.3
1,372,693 - Xcc-8004.1432.1 0.57 -0.8
1,372,812 + Xcc-8004.1432.1 0.80 -0.6
1,372,812 + Xcc-8004.1432.1 0.80 -0.7
1,372,812 + Xcc-8004.1432.1 0.80 -2.9
1,372,813 - Xcc-8004.1432.1 0.80 -0.2
1,372,813 - Xcc-8004.1432.1 0.80 -2.0
1,372,813 - Xcc-8004.1432.1 0.80 +1.6
1,372,813 - Xcc-8004.1432.1 0.80 -0.1
1,372,813 - Xcc-8004.1432.1 0.80 -0.4
1,372,813 - Xcc-8004.1432.1 0.80 -0.3
1,372,822 - Xcc-8004.1432.1 0.81 -1.4
1,372,822 - Xcc-8004.1432.1 0.81 -0.6
1,372,881 + -1.8
1,372,881 + -0.6
1,372,881 + +2.0
1,372,881 + -0.2
1,372,881 + -0.8
1,372,881 + -2.4
1,372,881 + +0.2
1,372,882 - +0.6
1,372,882 - -0.1
1,372,882 - -2.3
1,372,917 + -1.4
1,372,917 + +1.8
1,372,917 + +0.5
1,372,918 - +0.8
1,373,169 + Xcc-8004.1433.1 0.19 -1.0
1,373,170 - Xcc-8004.1433.1 0.19 -1.6
1,373,201 - Xcc-8004.1433.1 0.24 -1.2
1,373,276 + Xcc-8004.1433.1 0.35 +0.8
1,373,464 - Xcc-8004.1433.1 0.64 +0.4
1,373,628 + Xcc-8004.1433.1 0.88 -3.2
1,373,694 + -0.2
1,373,737 + -0.9
1,373,784 + -1.6
1,373,785 - -0.4

Or see this region's nucleotide sequence