Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1207.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1206.1 and Xcc-8004.1207.1 are separated by 31 nucleotidesXcc-8004.1207.1 and Xcc-8004.1208.1 are separated by 77 nucleotides Xcc-8004.1206.1: Xcc-8004.1206.1 - D-galactarate dehydratase (EC 4.2.1.42), at 1,139,341 to 1,140,885 Xcc-8004.1206.1 Xcc-8004.1207.1: Xcc-8004.1207.1 - probable porin, at 1,140,917 to 1,142,188 Xcc-8004.1207.1 Xcc-8004.1208.1: Xcc-8004.1208.1 - Glucarate dehydratase (EC 4.2.1.40), at 1,142,266 to 1,143,621 Xcc-8004.1208.1 Position (kb) 1140 1141 1142 1143Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1140.185 kb on + strand, within Xcc-8004.1206.1at 1140.537 kb on + strand, within Xcc-8004.1206.1at 1140.537 kb on + strand, within Xcc-8004.1206.1at 1140.537 kb on + strand, within Xcc-8004.1206.1at 1140.537 kb on + strand, within Xcc-8004.1206.1at 1140.538 kb on - strand, within Xcc-8004.1206.1at 1140.538 kb on - strand, within Xcc-8004.1206.1at 1140.538 kb on - strand, within Xcc-8004.1206.1at 1140.538 kb on - strand, within Xcc-8004.1206.1at 1140.538 kb on - strand, within Xcc-8004.1206.1at 1140.540 kb on - strand, within Xcc-8004.1206.1at 1140.891 kb on + strandat 1140.892 kb on - strandat 1140.892 kb on - strandat 1140.892 kb on - strandat 1140.949 kb on - strandat 1140.988 kb on - strandat 1140.988 kb on - strandat 1141.060 kb on + strand, within Xcc-8004.1207.1at 1141.060 kb on + strand, within Xcc-8004.1207.1at 1141.061 kb on - strand, within Xcc-8004.1207.1at 1141.061 kb on - strand, within Xcc-8004.1207.1at 1141.061 kb on - strand, within Xcc-8004.1207.1at 1141.061 kb on - strand, within Xcc-8004.1207.1at 1141.061 kb on - strand, within Xcc-8004.1207.1at 1141.102 kb on - strand, within Xcc-8004.1207.1at 1141.102 kb on - strand, within Xcc-8004.1207.1at 1141.102 kb on - strand, within Xcc-8004.1207.1at 1141.135 kb on - strand, within Xcc-8004.1207.1at 1141.363 kb on + strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.473 kb on + strand, within Xcc-8004.1207.1at 1141.474 kb on - strand, within Xcc-8004.1207.1at 1141.474 kb on - strand, within Xcc-8004.1207.1at 1141.520 kb on + strand, within Xcc-8004.1207.1at 1141.521 kb on - strand, within Xcc-8004.1207.1at 1141.521 kb on - strand, within Xcc-8004.1207.1at 1141.521 kb on - strand, within Xcc-8004.1207.1at 1141.545 kb on + strand, within Xcc-8004.1207.1at 1141.545 kb on + strand, within Xcc-8004.1207.1at 1141.545 kb on + strand, within Xcc-8004.1207.1at 1141.546 kb on - strand, within Xcc-8004.1207.1at 1141.546 kb on - strand, within Xcc-8004.1207.1at 1141.757 kb on + strand, within Xcc-8004.1207.1at 1141.969 kb on + strand, within Xcc-8004.1207.1at 1141.971 kb on + strand, within Xcc-8004.1207.1at 1141.971 kb on + strand, within Xcc-8004.1207.1at 1141.971 kb on + strand, within Xcc-8004.1207.1at 1141.972 kb on - strand, within Xcc-8004.1207.1at 1142.055 kb on + strand, within Xcc-8004.1207.1at 1142.055 kb on + strand, within Xcc-8004.1207.1at 1142.055 kb on + strand, within Xcc-8004.1207.1at 1142.056 kb on - strand, within Xcc-8004.1207.1at 1142.056 kb on - strand, within Xcc-8004.1207.1at 1142.058 kb on + strand, within Xcc-8004.1207.1at 1142.059 kb on - strand, within Xcc-8004.1207.1at 1142.177 kb on + strandat 1142.178 kb on - strandat 1142.178 kb on - strandat 1142.267 kb on + strandat 1142.268 kb on - strandat 1142.366 kb on + strandat 1142.367 kb on - strandat 1142.506 kb on - strand, within Xcc-8004.1208.1at 1142.568 kb on + strand, within Xcc-8004.1208.1at 1142.680 kb on - strand, within Xcc-8004.1208.1at 1142.680 kb on - strand, within Xcc-8004.1208.1at 1142.910 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.156 kb on - strand, within Xcc-8004.1208.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
1,140,185 + Xcc-8004.1206.1 0.55 -1.9
1,140,537 + Xcc-8004.1206.1 0.77 +1.0
1,140,537 + Xcc-8004.1206.1 0.77 +0.1
1,140,537 + Xcc-8004.1206.1 0.77 -1.5
1,140,537 + Xcc-8004.1206.1 0.77 -2.8
1,140,538 - Xcc-8004.1206.1 0.77 +0.7
1,140,538 - Xcc-8004.1206.1 0.77 -3.2
1,140,538 - Xcc-8004.1206.1 0.77 +0.3
1,140,538 - Xcc-8004.1206.1 0.77 -2.3
1,140,538 - Xcc-8004.1206.1 0.77 +0.2
1,140,540 - Xcc-8004.1206.1 0.78 +0.1
1,140,891 + +1.1
1,140,892 - +1.0
1,140,892 - -0.5
1,140,892 - +0.2
1,140,949 - +1.1
1,140,988 - -1.5
1,140,988 - +0.4
1,141,060 + Xcc-8004.1207.1 0.11 +1.2
1,141,060 + Xcc-8004.1207.1 0.11 -1.6
1,141,061 - Xcc-8004.1207.1 0.11 -0.3
1,141,061 - Xcc-8004.1207.1 0.11 -1.3
1,141,061 - Xcc-8004.1207.1 0.11 +1.2
1,141,061 - Xcc-8004.1207.1 0.11 -1.5
1,141,061 - Xcc-8004.1207.1 0.11 +1.0
1,141,102 - Xcc-8004.1207.1 0.15 +0.0
1,141,102 - Xcc-8004.1207.1 0.15 +0.6
1,141,102 - Xcc-8004.1207.1 0.15 +0.4
1,141,135 - Xcc-8004.1207.1 0.17 -1.6
1,141,363 + Xcc-8004.1207.1 0.35 -0.2
1,141,364 - Xcc-8004.1207.1 0.35 +0.5
1,141,364 - Xcc-8004.1207.1 0.35 +0.1
1,141,364 - Xcc-8004.1207.1 0.35 -0.6
1,141,364 - Xcc-8004.1207.1 0.35 -2.6
1,141,364 - Xcc-8004.1207.1 0.35 +1.5
1,141,473 + Xcc-8004.1207.1 0.44 +0.7
1,141,474 - Xcc-8004.1207.1 0.44 -0.8
1,141,474 - Xcc-8004.1207.1 0.44 +1.2
1,141,520 + Xcc-8004.1207.1 0.47 -1.3
1,141,521 - Xcc-8004.1207.1 0.47 -0.1
1,141,521 - Xcc-8004.1207.1 0.47 -1.0
1,141,521 - Xcc-8004.1207.1 0.47 -0.3
1,141,545 + Xcc-8004.1207.1 0.49 +2.6
1,141,545 + Xcc-8004.1207.1 0.49 -0.4
1,141,545 + Xcc-8004.1207.1 0.49 -0.3
1,141,546 - Xcc-8004.1207.1 0.49 -1.1
1,141,546 - Xcc-8004.1207.1 0.49 -0.3
1,141,757 + Xcc-8004.1207.1 0.66 +0.4
1,141,969 + Xcc-8004.1207.1 0.83 +1.6
1,141,971 + Xcc-8004.1207.1 0.83 +1.4
1,141,971 + Xcc-8004.1207.1 0.83 +0.8
1,141,971 + Xcc-8004.1207.1 0.83 -0.3
1,141,972 - Xcc-8004.1207.1 0.83 +0.0
1,142,055 + Xcc-8004.1207.1 0.89 -0.9
1,142,055 + Xcc-8004.1207.1 0.89 -1.6
1,142,055 + Xcc-8004.1207.1 0.89 -1.2
1,142,056 - Xcc-8004.1207.1 0.90 -0.5
1,142,056 - Xcc-8004.1207.1 0.90 -1.3
1,142,058 + Xcc-8004.1207.1 0.90 +2.0
1,142,059 - Xcc-8004.1207.1 0.90 -1.5
1,142,177 + -2.5
1,142,178 - +0.4
1,142,178 - -1.3
1,142,267 + +2.0
1,142,268 - +0.8
1,142,366 + +0.8
1,142,367 - -0.2
1,142,506 - Xcc-8004.1208.1 0.18 -0.1
1,142,568 + Xcc-8004.1208.1 0.22 -1.4
1,142,680 - Xcc-8004.1208.1 0.31 -1.1
1,142,680 - Xcc-8004.1208.1 0.31 +0.2
1,142,910 + Xcc-8004.1208.1 0.47 -0.3
1,143,008 + Xcc-8004.1208.1 0.55 +1.1
1,143,008 + Xcc-8004.1208.1 0.55 -1.6
1,143,008 + Xcc-8004.1208.1 0.55 -2.1
1,143,008 + Xcc-8004.1208.1 0.55 -0.1
1,143,008 + Xcc-8004.1208.1 0.55 +0.9
1,143,156 - Xcc-8004.1208.1 0.66 +0.9

Or see this region's nucleotide sequence