Strain Fitness in Pantoea sp. MT58 around IAI47_08080

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
1,707,952	-		IAI47_08070	0.50	+0.3
1,707,952	-		IAI47_08070	0.50	-0.0
1,707,953	+		IAI47_08070	0.50	+2.0
1,707,953	+		IAI47_08070	0.50	+0.0
1,707,954	-		IAI47_08070	0.50	-0.1
1,707,954	-		IAI47_08070	0.50	-0.0
1,707,958	+		IAI47_08070	0.51	+0.9
1,707,958	+		IAI47_08070	0.51	+0.9
1,707,959	-		IAI47_08070	0.51	-1.3
1,707,959	-		IAI47_08070	0.51	-1.2
1,707,959	-		IAI47_08070	0.51	-0.4
1,707,964	+		IAI47_08070	0.51	+0.3
1,707,964	+		IAI47_08070	0.51	+0.9
1,707,981	-		IAI47_08070	0.53	+0.7
1,707,995	+		IAI47_08070	0.55	-1.5
1,707,995	+		IAI47_08070	0.55	+0.2
1,707,996	-		IAI47_08070	0.55	-1.7
1,708,019	+		IAI47_08070	0.58	+1.0
1,708,027	+		IAI47_08070	0.59	+1.0
1,708,028	-		IAI47_08070	0.59	-0.5
1,708,058	-		IAI47_08070	0.62	+0.0
1,708,070	+		IAI47_08070	0.63	+0.0
1,708,071	-		IAI47_08070	0.64	-0.9
1,708,071	-		IAI47_08070	0.64	+0.2
1,708,090	+		IAI47_08070	0.66	-0.2
1,708,142	+		IAI47_08070	0.72	+2.0
1,708,189	+		IAI47_08070	0.77	+0.6
1,708,189	+		IAI47_08070	0.77	-0.8
1,708,190	-		IAI47_08070	0.77	+0.5
1,708,190	-		IAI47_08070	0.77	-1.8
1,708,190	-		IAI47_08070	0.77	-0.5
1,708,217	+		IAI47_08070	0.80	+1.7
1,708,217	+		IAI47_08070	0.80	-0.1
1,708,217	+		IAI47_08070	0.80	+0.4
1,708,218	-		IAI47_08070	0.80	-0.5
1,708,226	+		IAI47_08070	0.81	-0.5
1,708,226	+		IAI47_08070	0.81	-0.9
1,708,226	+		IAI47_08070	0.81	+0.1
1,708,226	+		IAI47_08070	0.81	+0.5
1,708,227	-		IAI47_08070	0.81	-0.3
1,708,227	-		IAI47_08070	0.81	-0.8
1,708,227	-		IAI47_08070	0.81	-0.9
1,708,227	-		IAI47_08070	0.81	-0.6
1,708,227	-		IAI47_08070	0.81	-2.6
1,708,227	-		IAI47_08070	0.81	-0.1
1,708,227	-		IAI47_08070	0.81	+0.2
1,708,227	-		IAI47_08070	0.81	+0.6
1,708,256	+		IAI47_08070	0.84	+0.7
1,708,257	-		IAI47_08070	0.84	-0.2
1,708,286	+		IAI47_08070	0.88	+0.6
1,708,286	+		IAI47_08070	0.88	+1.4
1,708,355	+				+1.8
1,708,355	+				+0.1
1,708,356	-				+0.3
1,708,382	+				+0.7
1,708,383	-				-0.3
1,708,386	-				+0.0
1,708,446	+				+0.9
1,708,542	+		IAI47_08075	0.54	+1.0
1,708,543	-		IAI47_08075	0.55	-1.2
1,708,543	-		IAI47_08075	0.55	+0.3
1,708,543	-		IAI47_08075	0.55	-0.8
1,708,543	-		IAI47_08075	0.55	-1.7
1,708,543	-		IAI47_08075	0.55	+1.9
1,708,543	-		IAI47_08075	0.55	-2.1
1,708,543	-		IAI47_08075	0.55	+1.9
1,708,558	+		IAI47_08075	0.62	-0.3
1,708,558	+		IAI47_08075	0.62	-0.5
1,708,603	+		IAI47_08075	0.85	-0.0
1,708,603	+		IAI47_08075	0.85	+0.2
1,708,603	+		IAI47_08075	0.85	+0.6
1,708,604	-		IAI47_08075	0.85	+0.9
1,708,618	+				+0.6
1,708,627	+				-0.7
1,708,628	-				-0.6
1,708,628	-				+0.9
1,708,628	-				-0.1
1,708,633	+				+0.4
1,708,634	-				+0.9
1,708,634	-				+1.1
1,708,660	+				+1.6
1,708,660	+				-0.4
1,708,661	-				-1.1
1,708,690	+				+0.5
1,708,690	+				-1.0
1,708,690	+				+1.4
1,708,691	-				+0.6
1,708,702	-				+0.7
1,708,752	-				+0.7
1,708,752	-				-0.0
1,708,764	-				-1.1
1,708,764	-				-1.0
1,708,764	-				+0.3
1,708,764	-				-2.0
1,708,783	+				-0.6
1,708,784	-				-0.1
1,708,839	+				+0.3
1,708,840	-				-0.2
1,708,921	-				-1.1
1,708,933	+				-0.2
1,708,943	+				+1.1
1,708,991	+		IAI47_08080	0.16	+1.0
1,708,991	+		IAI47_08080	0.16	+1.5
1,709,009	+		IAI47_08080	0.23	+0.9
1,709,010	-		IAI47_08080	0.24	-0.7
1,709,022	+		IAI47_08080	0.29	+0.5
1,709,023	-		IAI47_08080	0.29	+0.9
1,709,023	-		IAI47_08080	0.29	+0.2
1,709,052	+		IAI47_08080	0.41	+1.3
1,709,052	+		IAI47_08080	0.41	+1.3
1,709,134	+		IAI47_08080	0.73	-0.5
1,709,135	-		IAI47_08080	0.74	-0.6
1,709,143	-		IAI47_08080	0.77	-0.3
1,709,197	+				+0.2
1,709,197	+				-0.1
1,709,197	+				+1.1
1,709,197	+				+0.9
1,709,197	+				+1.9
1,709,198	-				-0.4
1,709,198	-				+1.5
1,709,198	-				+1.5
1,709,202	-				-1.0
1,709,229	+				-1.2
1,709,229	+				+0.4
1,709,229	+				+0.6
1,709,229	+				-0.2
1,709,230	-				+1.0
1,709,299	-				-0.7
1,709,299	-				-2.3
1,709,306	-				-1.6
1,709,306	-				-1.2
1,709,392	-		IAI47_08085	0.20	-1.5
1,709,392	-		IAI47_08085	0.20	-2.1
1,709,392	-		IAI47_08085	0.20	-1.5
1,709,392	-		IAI47_08085	0.20	-0.3
1,709,395	-		IAI47_08085	0.21	-1.4
1,709,395	-		IAI47_08085	0.21	+0.5
1,709,395	-		IAI47_08085	0.21	-0.5
1,709,395	-		IAI47_08085	0.21	-1.2
1,709,435	-		IAI47_08085	0.27	-2.4
1,709,449	-		IAI47_08085	0.29	-1.1
1,709,566	-		IAI47_08085	0.48	-0.9
1,709,638	-		IAI47_08085	0.59	-1.5
1,709,638	-		IAI47_08085	0.59	-1.6
1,709,702	-		IAI47_08085	0.69	-2.5
1,709,702	-		IAI47_08085	0.69	-2.3
1,709,744	-		IAI47_08085	0.76	-2.5
1,709,798	-		IAI47_08085	0.85	-1.3
1,709,798	-		IAI47_08085	0.85	-1.7
1,709,813	-		IAI47_08085	0.87	-2.5
1,709,813	-		IAI47_08085	0.87	-1.0
1,709,813	-		IAI47_08085	0.87	+1.3
1,709,813	-		IAI47_08085	0.87	-2.4
1,709,840	-				-2.2
1,709,895	+				-1.1
1,709,895	+				-0.9
1,709,896	-				+0.1
1,709,896	-				+0.4
1,709,896	-				-0.2
1,709,896	-				-1.6
1,709,907	-				+0.8
1,709,907	-				-0.5
1,709,907	-				+1.6
1,709,907	-				-0.2
1,709,995	+				-1.7
1,709,995	+				-2.1
1,709,995	+				+0.5
1,709,996	-				+0.5
1,709,996	-				-1.1
1,709,996	-				-2.3
1,709,996	-				-0.9
1,709,996	-				-0.2
1,709,996	-				-0.2
1,709,996	-				-1.2
1,709,996	-				+2.1
1,709,996	-				-0.5
1,710,027	-				+1.0
1,710,040	+				-1.2
1,710,041	-				-1.6
1,710,049	+				+0.1
1,710,050	-				-1.3
1,710,050	-				-0.3
1,710,055	+				-0.3
1,710,056	-				-0.9
1,710,066	+				-1.2
1,710,066	+				+1.5
1,710,066	+				+0.0
1,710,170	+		IAI47_08090	0.36	-0.5
1,710,171	-		IAI47_08090	0.36	+1.1