Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3353 and HP15_3354 are separated by 77 nucleotides HP15_3354 and HP15_3355 are separated by 53 nucleotides
HP15_3353: HP15_3353 - 4-hydroxybenzoate octaprenyltransferase, at 3,514,927 to 3,515,814
_3353
HP15_3354: HP15_3354 - two component transcriptional regulator, winged helix family, at 3,515,892 to 3,516,584
_3354
HP15_3355: HP15_3355 - multi-sensor signal transduction histidine kinase, at 3,516,638 to 3,517,957
_3355
Position (kb)
3515
3516
3517 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3514.932 kb on + strand at 3515.827 kb on - strand at 3515.834 kb on + strand at 3515.842 kb on - strand at 3515.880 kb on + strand at 3515.888 kb on + strand at 3516.036 kb on + strand, within HP15_3354 at 3516.131 kb on + strand, within HP15_3354 at 3516.281 kb on - strand, within HP15_3354 at 3516.307 kb on - strand, within HP15_3354 at 3516.319 kb on - strand, within HP15_3354 at 3516.341 kb on + strand, within HP15_3354 at 3516.418 kb on - strand, within HP15_3354 at 3516.609 kb on + strand at 3516.740 kb on - strand at 3516.888 kb on - strand, within HP15_3355 at 3516.930 kb on - strand, within HP15_3355 at 3517.062 kb on + strand, within HP15_3355 at 3517.216 kb on + strand, within HP15_3355 at 3517.294 kb on + strand, within HP15_3355 at 3517.417 kb on - strand, within HP15_3355
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 3,514,932 + +0.1 3,515,827 - -0.3 3,515,834 + -0.7 3,515,842 - -1.4 3,515,880 + -1.0 3,515,888 + -0.6 3,516,036 + HP15_3354 0.21 -0.6 3,516,131 + HP15_3354 0.34 -2.8 3,516,281 - HP15_3354 0.56 -1.8 3,516,307 - HP15_3354 0.60 -1.9 3,516,319 - HP15_3354 0.62 -0.6 3,516,341 + HP15_3354 0.65 -0.8 3,516,418 - HP15_3354 0.76 -0.5 3,516,609 + +0.2 3,516,740 - -0.8 3,516,888 - HP15_3355 0.19 -0.5 3,516,930 - HP15_3355 0.22 -0.5 3,517,062 + HP15_3355 0.32 -0.1 3,517,216 + HP15_3355 0.44 +0.5 3,517,294 + HP15_3355 0.50 +0.8 3,517,417 - HP15_3355 0.59 -0.2
Or see this region's nucleotide sequence