Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1357

Experiment: MoLS4 with L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1355 and DVU1356 are separated by 7 nucleotidesDVU1356 and DVU1357 overlap by 4 nucleotidesDVU1357 and DVU1358 are separated by 218 nucleotidesDVU1358 and DVU1359 overlap by 4 nucleotides DVU1355: DVU1355 - hypothetical protein (TIGR), at 1,434,875 to 1,435,243 DVU1355 DVU1356: DVU1356 - HD domain protein (TIGR), at 1,435,251 to 1,436,054 DVU1356 DVU1357: DVU1357 - conserved domain protein (TIGR), at 1,436,051 to 1,436,677 DVU1357 DVU1358: DVU1358 - hydrolase, haloacid dehalogenase-like family (TIGR), at 1,436,896 to 1,437,588 DVU1358 DVU1359: DVU1359 - hypothetical protein (TIGR), at 1,437,585 to 1,438,733 DVU1359 Position (kb) 1436 1437Strain fitness (log2 ratio) -2 -1 0 1 2at 1435.093 kb on - strand, within DVU1355at 1435.167 kb on - strand, within DVU1355at 1435.206 kb on - strand, within DVU1355at 1435.211 kb on - strandat 1435.211 kb on - strandat 1435.265 kb on - strandat 1435.335 kb on + strand, within DVU1356at 1435.352 kb on + strand, within DVU1356at 1435.352 kb on + strand, within DVU1356at 1435.360 kb on - strand, within DVU1356at 1435.360 kb on - strand, within DVU1356at 1435.435 kb on - strand, within DVU1356at 1435.525 kb on + strand, within DVU1356at 1435.625 kb on - strand, within DVU1356at 1435.716 kb on - strand, within DVU1356at 1435.759 kb on - strand, within DVU1356at 1435.810 kb on + strand, within DVU1356at 1435.823 kb on + strand, within DVU1356at 1436.036 kb on + strandat 1436.087 kb on + strandat 1436.120 kb on + strand, within DVU1357at 1436.659 kb on + strandat 1436.683 kb on + strandat 1436.737 kb on - strandat 1436.804 kb on - strandat 1436.810 kb on + strandat 1436.837 kb on - strandat 1436.877 kb on - strandat 1436.968 kb on + strand, within DVU1358at 1436.976 kb on - strand, within DVU1358at 1437.052 kb on - strand, within DVU1358at 1437.136 kb on - strand, within DVU1358at 1437.197 kb on - strand, within DVU1358at 1437.205 kb on - strand, within DVU1358at 1437.253 kb on + strand, within DVU1358at 1437.308 kb on + strand, within DVU1358at 1437.321 kb on - strand, within DVU1358at 1437.323 kb on + strand, within DVU1358at 1437.370 kb on - strand, within DVU1358at 1437.401 kb on + strand, within DVU1358at 1437.409 kb on - strand, within DVU1358at 1437.437 kb on + strand, within DVU1358at 1437.499 kb on - strand, within DVU1358at 1437.500 kb on - strand, within DVU1358at 1437.512 kb on - strand, within DVU1358at 1437.540 kb on - strandat 1437.553 kb on - strandat 1437.573 kb on - strandat 1437.606 kb on - strandat 1437.612 kb on - strandat 1437.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine (N)
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1,435,093 - DVU1355 0.59 -2.6
1,435,167 - DVU1355 0.79 +0.9
1,435,206 - DVU1355 0.90 -1.9
1,435,211 - +1.5
1,435,211 - -0.1
1,435,265 - +1.3
1,435,335 + DVU1356 0.10 +0.7
1,435,352 + DVU1356 0.13 -1.0
1,435,352 + DVU1356 0.13 -0.8
1,435,360 - DVU1356 0.14 +0.9
1,435,360 - DVU1356 0.14 -0.1
1,435,435 - DVU1356 0.23 -2.1
1,435,525 + DVU1356 0.34 +0.1
1,435,625 - DVU1356 0.47 -0.3
1,435,716 - DVU1356 0.58 +0.0
1,435,759 - DVU1356 0.63 -0.6
1,435,810 + DVU1356 0.70 +1.9
1,435,823 + DVU1356 0.71 -0.3
1,436,036 + -0.2
1,436,087 + -2.1
1,436,120 + DVU1357 0.11 -0.3
1,436,659 + +0.9
1,436,683 + -1.0
1,436,737 - +0.3
1,436,804 - -0.9
1,436,810 + +0.5
1,436,837 - +0.4
1,436,877 - -0.0
1,436,968 + DVU1358 0.10 +0.0
1,436,976 - DVU1358 0.12 +0.4
1,437,052 - DVU1358 0.23 -0.4
1,437,136 - DVU1358 0.35 +0.7
1,437,197 - DVU1358 0.43 -0.4
1,437,205 - DVU1358 0.45 -2.0
1,437,253 + DVU1358 0.52 -0.4
1,437,308 + DVU1358 0.59 -0.5
1,437,321 - DVU1358 0.61 +1.4
1,437,323 + DVU1358 0.62 +0.1
1,437,370 - DVU1358 0.68 -1.4
1,437,401 + DVU1358 0.73 -0.6
1,437,409 - DVU1358 0.74 -0.5
1,437,437 + DVU1358 0.78 -2.1
1,437,499 - DVU1358 0.87 +0.9
1,437,500 - DVU1358 0.87 -1.4
1,437,512 - DVU1358 0.89 +0.2
1,437,540 - -0.2
1,437,553 - +0.9
1,437,573 - -0.0
1,437,606 - -0.3
1,437,612 - -0.9
1,437,650 - -0.2

Or see this region's nucleotide sequence