Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5213.1 and Xcc-8004.5214.1 are separated by 69 nucleotides Xcc-8004.5214.1 and Xcc-8004.5215.1 are separated by 122 nucleotides
Xcc-8004.5213.1: Xcc-8004.5213.1 - Xylose isomerase (EC 5.3.1.5), at 4,946,969 to 4,948,309
Xcc-8004.5213.1
Xcc-8004.5214.1: Xcc-8004.5214.1 - sal operon transcriptional repressor, at 4,948,379 to 4,949,494
Xcc-8004.5214.1
Xcc-8004.5215.1: Xcc-8004.5215.1 - Alpha-glucuronidase (EC 3.2.1.139), at 4,949,617 to 4,951,836
Xcc-8004.5215.1
Position (kb) 4948
4949
4950 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4947.440 kb on + strand, within Xcc-8004.5213.1 at 4947.440 kb on + strand, within Xcc-8004.5213.1 at 4947.441 kb on - strand, within Xcc-8004.5213.1 at 4947.546 kb on - strand, within Xcc-8004.5213.1 at 4947.546 kb on - strand, within Xcc-8004.5213.1 at 4947.549 kb on + strand, within Xcc-8004.5213.1 at 4947.550 kb on - strand, within Xcc-8004.5213.1 at 4947.550 kb on - strand, within Xcc-8004.5213.1 at 4947.573 kb on - strand, within Xcc-8004.5213.1 at 4947.573 kb on - strand, within Xcc-8004.5213.1 at 4947.573 kb on - strand, within Xcc-8004.5213.1 at 4947.573 kb on - strand, within Xcc-8004.5213.1 at 4948.151 kb on + strand, within Xcc-8004.5213.1 at 4948.151 kb on + strand, within Xcc-8004.5213.1 at 4948.223 kb on + strand at 4948.224 kb on - strand at 4948.224 kb on - strand at 4948.224 kb on - strand at 4948.224 kb on - strand at 4948.275 kb on - strand at 4948.381 kb on - strand at 4948.381 kb on - strand at 4948.509 kb on + strand, within Xcc-8004.5214.1 at 4948.600 kb on + strand, within Xcc-8004.5214.1 at 4948.601 kb on - strand, within Xcc-8004.5214.1 at 4948.767 kb on + strand, within Xcc-8004.5214.1 at 4948.768 kb on - strand, within Xcc-8004.5214.1 at 4948.768 kb on - strand, within Xcc-8004.5214.1 at 4948.880 kb on - strand, within Xcc-8004.5214.1 at 4948.881 kb on + strand, within Xcc-8004.5214.1 at 4948.881 kb on + strand, within Xcc-8004.5214.1 at 4948.881 kb on + strand, within Xcc-8004.5214.1 at 4948.881 kb on + strand, within Xcc-8004.5214.1 at 4948.882 kb on - strand, within Xcc-8004.5214.1 at 4948.882 kb on - strand, within Xcc-8004.5214.1 at 4949.229 kb on + strand, within Xcc-8004.5214.1 at 4949.230 kb on - strand, within Xcc-8004.5214.1 at 4949.292 kb on + strand, within Xcc-8004.5214.1 at 4949.292 kb on + strand, within Xcc-8004.5214.1 at 4949.416 kb on + strand at 4949.417 kb on - strand at 4949.417 kb on - strand at 4949.625 kb on + strand at 4949.626 kb on - strand at 4949.626 kb on - strand at 4949.626 kb on - strand at 4950.088 kb on + strand, within Xcc-8004.5215.1 at 4950.223 kb on + strand, within Xcc-8004.5215.1 at 4950.280 kb on + strand, within Xcc-8004.5215.1 at 4950.289 kb on + strand, within Xcc-8004.5215.1 at 4950.373 kb on + strand, within Xcc-8004.5215.1 at 4950.373 kb on + strand, within Xcc-8004.5215.1 at 4950.373 kb on + strand, within Xcc-8004.5215.1 at 4950.374 kb on - strand, within Xcc-8004.5215.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,947,440 + Xcc-8004.5213.1 0.35 +0.9 4,947,440 + Xcc-8004.5213.1 0.35 +0.9 4,947,441 - Xcc-8004.5213.1 0.35 -1.3 4,947,546 - Xcc-8004.5213.1 0.43 +0.6 4,947,546 - Xcc-8004.5213.1 0.43 +0.6 4,947,549 + Xcc-8004.5213.1 0.43 -0.3 4,947,550 - Xcc-8004.5213.1 0.43 +0.5 4,947,550 - Xcc-8004.5213.1 0.43 +0.5 4,947,573 - Xcc-8004.5213.1 0.45 -1.0 4,947,573 - Xcc-8004.5213.1 0.45 -0.2 4,947,573 - Xcc-8004.5213.1 0.45 -3.0 4,947,573 - Xcc-8004.5213.1 0.45 -0.6 4,948,151 + Xcc-8004.5213.1 0.88 +0.3 4,948,151 + Xcc-8004.5213.1 0.88 -1.6 4,948,223 + +0.6 4,948,224 - -1.3 4,948,224 - -0.8 4,948,224 - +0.7 4,948,224 - -2.4 4,948,275 - +0.7 4,948,381 - -1.1 4,948,381 - -1.1 4,948,509 + Xcc-8004.5214.1 0.12 +0.3 4,948,600 + Xcc-8004.5214.1 0.20 -1.4 4,948,601 - Xcc-8004.5214.1 0.20 -0.9 4,948,767 + Xcc-8004.5214.1 0.35 -0.1 4,948,768 - Xcc-8004.5214.1 0.35 -0.7 4,948,768 - Xcc-8004.5214.1 0.35 +0.0 4,948,880 - Xcc-8004.5214.1 0.45 -0.6 4,948,881 + Xcc-8004.5214.1 0.45 -0.4 4,948,881 + Xcc-8004.5214.1 0.45 +0.9 4,948,881 + Xcc-8004.5214.1 0.45 -0.2 4,948,881 + Xcc-8004.5214.1 0.45 +1.8 4,948,882 - Xcc-8004.5214.1 0.45 -0.9 4,948,882 - Xcc-8004.5214.1 0.45 -1.7 4,949,229 + Xcc-8004.5214.1 0.76 -1.9 4,949,230 - Xcc-8004.5214.1 0.76 -0.9 4,949,292 + Xcc-8004.5214.1 0.82 +0.2 4,949,292 + Xcc-8004.5214.1 0.82 -2.7 4,949,416 + -2.2 4,949,417 - -2.1 4,949,417 - +1.2 4,949,625 + -1.2 4,949,626 - +0.8 4,949,626 - +0.6 4,949,626 - +1.7 4,950,088 + Xcc-8004.5215.1 0.21 -0.7 4,950,223 + Xcc-8004.5215.1 0.27 -0.7 4,950,280 + Xcc-8004.5215.1 0.30 -0.4 4,950,289 + Xcc-8004.5215.1 0.30 -0.8 4,950,373 + Xcc-8004.5215.1 0.34 -0.1 4,950,373 + Xcc-8004.5215.1 0.34 -0.3 4,950,373 + Xcc-8004.5215.1 0.34 +0.2 4,950,374 - Xcc-8004.5215.1 0.34 -2.2
Or see this region's nucleotide sequence