Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4952.1 and Xcc-8004.4953.1 are separated by 114 nucleotides Xcc-8004.4953.1 and Xcc-8004.4954.1 are separated by 60 nucleotides Xcc-8004.4954.1 and Xcc-8004.4955.1 are separated by 242 nucleotides
Xcc-8004.4952.1: Xcc-8004.4952.1 - transport protein, at 4,704,648 to 4,705,754
Xcc-8004.4952.1
Xcc-8004.4953.1: Xcc-8004.4953.1 - Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase, at 4,705,869 to 4,706,600
Xcc-8004.4953.1
Xcc-8004.4954.1: Xcc-8004.4954.1 - Peptidase B (EC 3.4.11.23), at 4,706,661 to 4,708,031
Xcc-8004.4954.1
Xcc-8004.4955.1: Xcc-8004.4955.1 - Catalase (EC 1.11.1.6), at 4,708,274 to 4,709,365
Xcc-8004.4955.1
Position (kb) 4706
4707
4708
4709 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4705.857 kb on + strand at 4705.858 kb on - strand at 4705.858 kb on - strand at 4705.858 kb on - strand at 4705.858 kb on - strand at 4705.959 kb on + strand, within Xcc-8004.4953.1 at 4705.959 kb on + strand, within Xcc-8004.4953.1 at 4705.960 kb on - strand, within Xcc-8004.4953.1 at 4705.960 kb on - strand, within Xcc-8004.4953.1 at 4705.960 kb on - strand, within Xcc-8004.4953.1 at 4705.960 kb on - strand, within Xcc-8004.4953.1 at 4706.148 kb on + strand, within Xcc-8004.4953.1 at 4706.148 kb on + strand, within Xcc-8004.4953.1 at 4706.149 kb on - strand, within Xcc-8004.4953.1 at 4706.149 kb on - strand, within Xcc-8004.4953.1 at 4706.160 kb on + strand, within Xcc-8004.4953.1 at 4706.160 kb on + strand, within Xcc-8004.4953.1 at 4706.160 kb on + strand, within Xcc-8004.4953.1 at 4706.160 kb on + strand, within Xcc-8004.4953.1 at 4706.161 kb on - strand, within Xcc-8004.4953.1 at 4706.161 kb on - strand, within Xcc-8004.4953.1 at 4706.161 kb on - strand, within Xcc-8004.4953.1 at 4706.161 kb on - strand, within Xcc-8004.4953.1 at 4706.188 kb on - strand, within Xcc-8004.4953.1 at 4706.884 kb on - strand, within Xcc-8004.4954.1 at 4706.884 kb on - strand, within Xcc-8004.4954.1 at 4706.889 kb on + strand, within Xcc-8004.4954.1 at 4706.890 kb on - strand, within Xcc-8004.4954.1 at 4707.113 kb on + strand, within Xcc-8004.4954.1 at 4707.113 kb on + strand, within Xcc-8004.4954.1 at 4707.113 kb on + strand, within Xcc-8004.4954.1 at 4707.113 kb on + strand, within Xcc-8004.4954.1 at 4707.113 kb on + strand, within Xcc-8004.4954.1 at 4707.114 kb on - strand, within Xcc-8004.4954.1 at 4707.114 kb on - strand, within Xcc-8004.4954.1 at 4707.114 kb on - strand, within Xcc-8004.4954.1 at 4707.114 kb on - strand, within Xcc-8004.4954.1 at 4707.114 kb on - strand, within Xcc-8004.4954.1 at 4707.114 kb on - strand, within Xcc-8004.4954.1 at 4707.615 kb on + strand, within Xcc-8004.4954.1 at 4707.616 kb on - strand, within Xcc-8004.4954.1 at 4707.616 kb on - strand, within Xcc-8004.4954.1 at 4707.616 kb on - strand, within Xcc-8004.4954.1 at 4707.798 kb on + strand, within Xcc-8004.4954.1 at 4707.798 kb on + strand, within Xcc-8004.4954.1 at 4707.798 kb on + strand, within Xcc-8004.4954.1 at 4707.799 kb on - strand, within Xcc-8004.4954.1 at 4707.807 kb on + strand, within Xcc-8004.4954.1 at 4707.808 kb on - strand, within Xcc-8004.4954.1 at 4707.880 kb on - strand, within Xcc-8004.4954.1 at 4707.880 kb on - strand, within Xcc-8004.4954.1 at 4707.893 kb on + strand, within Xcc-8004.4954.1 at 4707.930 kb on + strand at 4707.930 kb on + strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4708.165 kb on + strand at 4708.165 kb on + strand at 4708.165 kb on + strand at 4708.165 kb on + strand at 4708.166 kb on - strand at 4708.475 kb on - strand, within Xcc-8004.4955.1 at 4708.475 kb on - strand, within Xcc-8004.4955.1 at 4708.883 kb on + strand, within Xcc-8004.4955.1 at 4708.883 kb on + strand, within Xcc-8004.4955.1 at 4708.883 kb on + strand, within Xcc-8004.4955.1 at 4708.884 kb on - strand, within Xcc-8004.4955.1 at 4708.934 kb on + strand, within Xcc-8004.4955.1 at 4708.934 kb on + strand, within Xcc-8004.4955.1 at 4708.934 kb on + strand, within Xcc-8004.4955.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,705,857 + +1.1 4,705,858 - +0.1 4,705,858 - +0.6 4,705,858 - +0.6 4,705,858 - -0.6 4,705,959 + Xcc-8004.4953.1 0.12 +1.9 4,705,959 + Xcc-8004.4953.1 0.12 +2.0 4,705,960 - Xcc-8004.4953.1 0.12 +0.0 4,705,960 - Xcc-8004.4953.1 0.12 +0.8 4,705,960 - Xcc-8004.4953.1 0.12 -1.1 4,705,960 - Xcc-8004.4953.1 0.12 +0.0 4,706,148 + Xcc-8004.4953.1 0.38 +0.2 4,706,148 + Xcc-8004.4953.1 0.38 -1.2 4,706,149 - Xcc-8004.4953.1 0.38 +0.0 4,706,149 - Xcc-8004.4953.1 0.38 -1.0 4,706,160 + Xcc-8004.4953.1 0.40 -1.8 4,706,160 + Xcc-8004.4953.1 0.40 -2.1 4,706,160 + Xcc-8004.4953.1 0.40 +0.1 4,706,160 + Xcc-8004.4953.1 0.40 -1.6 4,706,161 - Xcc-8004.4953.1 0.40 -2.3 4,706,161 - Xcc-8004.4953.1 0.40 -1.7 4,706,161 - Xcc-8004.4953.1 0.40 -0.9 4,706,161 - Xcc-8004.4953.1 0.40 -0.1 4,706,188 - Xcc-8004.4953.1 0.44 -1.4 4,706,884 - Xcc-8004.4954.1 0.16 -1.5 4,706,884 - Xcc-8004.4954.1 0.16 -1.3 4,706,889 + Xcc-8004.4954.1 0.17 -0.5 4,706,890 - Xcc-8004.4954.1 0.17 -2.1 4,707,113 + Xcc-8004.4954.1 0.33 -0.7 4,707,113 + Xcc-8004.4954.1 0.33 -3.0 4,707,113 + Xcc-8004.4954.1 0.33 -0.1 4,707,113 + Xcc-8004.4954.1 0.33 -2.9 4,707,113 + Xcc-8004.4954.1 0.33 +0.6 4,707,114 - Xcc-8004.4954.1 0.33 -1.5 4,707,114 - Xcc-8004.4954.1 0.33 -1.2 4,707,114 - Xcc-8004.4954.1 0.33 -2.3 4,707,114 - Xcc-8004.4954.1 0.33 +0.2 4,707,114 - Xcc-8004.4954.1 0.33 -1.0 4,707,114 - Xcc-8004.4954.1 0.33 +0.0 4,707,615 + Xcc-8004.4954.1 0.70 -1.0 4,707,616 - Xcc-8004.4954.1 0.70 +0.3 4,707,616 - Xcc-8004.4954.1 0.70 -1.1 4,707,616 - Xcc-8004.4954.1 0.70 -2.2 4,707,798 + Xcc-8004.4954.1 0.83 -0.4 4,707,798 + Xcc-8004.4954.1 0.83 -1.5 4,707,798 + Xcc-8004.4954.1 0.83 -2.8 4,707,799 - Xcc-8004.4954.1 0.83 -2.7 4,707,807 + Xcc-8004.4954.1 0.84 -3.3 4,707,808 - Xcc-8004.4954.1 0.84 -1.9 4,707,880 - Xcc-8004.4954.1 0.89 -3.3 4,707,880 - Xcc-8004.4954.1 0.89 -0.7 4,707,893 + Xcc-8004.4954.1 0.90 -0.4 4,707,930 + -1.0 4,707,930 + -1.8 4,707,931 - -0.1 4,707,931 - -1.5 4,707,931 - -0.3 4,707,931 - -2.2 4,707,931 - -1.9 4,707,931 - -2.2 4,708,165 + +0.9 4,708,165 + +0.3 4,708,165 + -2.5 4,708,165 + -1.2 4,708,166 - -0.5 4,708,475 - Xcc-8004.4955.1 0.18 -1.2 4,708,475 - Xcc-8004.4955.1 0.18 -0.6 4,708,883 + Xcc-8004.4955.1 0.56 +0.3 4,708,883 + Xcc-8004.4955.1 0.56 -0.8 4,708,883 + Xcc-8004.4955.1 0.56 +0.5 4,708,884 - Xcc-8004.4955.1 0.56 -1.4 4,708,934 + Xcc-8004.4955.1 0.60 +0.4 4,708,934 + Xcc-8004.4955.1 0.60 -0.2 4,708,934 + Xcc-8004.4955.1 0.60 -0.5
Or see this region's nucleotide sequence