Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4199.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4197.1 and Xcc-8004.4198.1 are separated by 36 nucleotidesXcc-8004.4198.1 and Xcc-8004.4199.1 are separated by 145 nucleotidesXcc-8004.4199.1 and Xcc-8004.4200.1 are separated by 64 nucleotidesXcc-8004.4200.1 and Xcc-8004.4201.1 are separated by 65 nucleotides Xcc-8004.4197.1: Xcc-8004.4197.1 - extracellular protease, at 4,028,513 to 4,030,255 Xcc-8004.4197.1 Xcc-8004.4198.1: Xcc-8004.4198.1 - hypothetical protein, at 4,030,292 to 4,030,423 Xcc-8004.4198.1 Xcc-8004.4199.1: Xcc-8004.4199.1 - Branched-chain amino acid aminotransferase (EC 2.6.1.42), at 4,030,569 to 4,031,654 Xcc-8004.4199.1 Xcc-8004.4200.1: Xcc-8004.4200.1 - probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly, at 4,031,719 to 4,032,381 Xcc-8004.4200.1 Xcc-8004.4201.1: Xcc-8004.4201.1 - FIG01210375: hypothetical protein, at 4,032,447 to 4,032,866 Xcc-8004.4201.1 Position (kb) 4030 4031 4032Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4029.597 kb on + strand, within Xcc-8004.4197.1at 4029.597 kb on + strand, within Xcc-8004.4197.1at 4029.676 kb on - strand, within Xcc-8004.4197.1at 4029.676 kb on - strand, within Xcc-8004.4197.1at 4029.725 kb on - strand, within Xcc-8004.4197.1at 4029.725 kb on - strand, within Xcc-8004.4197.1at 4029.956 kb on + strand, within Xcc-8004.4197.1at 4029.957 kb on - strand, within Xcc-8004.4197.1at 4030.098 kb on + strandat 4030.098 kb on + strandat 4030.098 kb on + strandat 4030.099 kb on - strandat 4030.099 kb on - strandat 4030.099 kb on - strandat 4030.099 kb on - strandat 4030.099 kb on - strandat 4030.149 kb on + strandat 4030.149 kb on + strandat 4030.149 kb on + strandat 4030.149 kb on + strandat 4030.149 kb on + strandat 4030.149 kb on + strandat 4030.150 kb on - strandat 4030.150 kb on - strandat 4030.150 kb on - strandat 4030.150 kb on - strandat 4030.150 kb on - strandat 4030.228 kb on + strandat 4030.228 kb on + strandat 4030.228 kb on + strandat 4030.228 kb on + strandat 4030.228 kb on + strandat 4030.228 kb on + strandat 4030.228 kb on + strandat 4030.229 kb on - strandat 4030.229 kb on - strandat 4030.229 kb on - strandat 4030.229 kb on - strandat 4030.270 kb on + strandat 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.315 kb on + strand, within Xcc-8004.4198.1at 4030.316 kb on - strand, within Xcc-8004.4198.1at 4030.316 kb on - strand, within Xcc-8004.4198.1at 4030.316 kb on - strand, within Xcc-8004.4198.1at 4030.316 kb on - strand, within Xcc-8004.4198.1at 4030.316 kb on - strand, within Xcc-8004.4198.1at 4030.316 kb on - strand, within Xcc-8004.4198.1at 4030.370 kb on + strand, within Xcc-8004.4198.1at 4030.371 kb on - strand, within Xcc-8004.4198.1at 4030.397 kb on - strand, within Xcc-8004.4198.1at 4030.421 kb on + strandat 4030.422 kb on - strandat 4030.422 kb on - strandat 4030.422 kb on - strandat 4030.425 kb on + strandat 4030.444 kb on + strandat 4030.445 kb on - strandat 4030.570 kb on + strandat 4030.570 kb on + strandat 4030.570 kb on + strandat 4030.570 kb on + strandat 4030.570 kb on + strandat 4030.571 kb on - strandat 4030.571 kb on - strandat 4030.571 kb on - strandat 4030.571 kb on - strandat 4030.919 kb on - strand, within Xcc-8004.4199.1at 4030.957 kb on + strand, within Xcc-8004.4199.1at 4030.957 kb on + strand, within Xcc-8004.4199.1at 4030.957 kb on + strand, within Xcc-8004.4199.1at 4030.957 kb on + strand, within Xcc-8004.4199.1at 4030.957 kb on + strand, within Xcc-8004.4199.1at 4030.957 kb on + strand, within Xcc-8004.4199.1at 4030.957 kb on + strand, within Xcc-8004.4199.1at 4030.958 kb on - strand, within Xcc-8004.4199.1at 4030.958 kb on - strand, within Xcc-8004.4199.1at 4030.958 kb on - strand, within Xcc-8004.4199.1at 4030.958 kb on - strand, within Xcc-8004.4199.1at 4030.958 kb on - strand, within Xcc-8004.4199.1at 4030.958 kb on - strand, within Xcc-8004.4199.1at 4031.008 kb on + strand, within Xcc-8004.4199.1at 4031.009 kb on - strand, within Xcc-8004.4199.1at 4031.041 kb on + strand, within Xcc-8004.4199.1at 4031.041 kb on + strand, within Xcc-8004.4199.1at 4031.042 kb on - strand, within Xcc-8004.4199.1at 4031.092 kb on + strand, within Xcc-8004.4199.1at 4031.092 kb on + strand, within Xcc-8004.4199.1at 4031.093 kb on - strand, within Xcc-8004.4199.1at 4031.140 kb on + strand, within Xcc-8004.4199.1at 4031.140 kb on + strand, within Xcc-8004.4199.1at 4031.140 kb on + strand, within Xcc-8004.4199.1at 4031.140 kb on + strand, within Xcc-8004.4199.1at 4031.140 kb on + strand, within Xcc-8004.4199.1at 4031.141 kb on - strand, within Xcc-8004.4199.1at 4031.141 kb on - strand, within Xcc-8004.4199.1at 4031.167 kb on + strand, within Xcc-8004.4199.1at 4031.167 kb on + strand, within Xcc-8004.4199.1at 4031.167 kb on + strand, within Xcc-8004.4199.1at 4031.167 kb on + strand, within Xcc-8004.4199.1at 4031.167 kb on + strand, within Xcc-8004.4199.1at 4031.167 kb on + strand, within Xcc-8004.4199.1at 4031.167 kb on + strand, within Xcc-8004.4199.1at 4031.167 kb on + strand, within Xcc-8004.4199.1at 4031.167 kb on + strand, within Xcc-8004.4199.1at 4031.167 kb on + strand, within Xcc-8004.4199.1at 4031.167 kb on + strand, within Xcc-8004.4199.1at 4031.167 kb on + strand, within Xcc-8004.4199.1at 4031.168 kb on - strand, within Xcc-8004.4199.1at 4031.168 kb on - strand, within Xcc-8004.4199.1at 4031.168 kb on - strand, within Xcc-8004.4199.1at 4031.168 kb on - strand, within Xcc-8004.4199.1at 4031.168 kb on - strand, within Xcc-8004.4199.1at 4031.170 kb on + strand, within Xcc-8004.4199.1at 4031.170 kb on + strand, within Xcc-8004.4199.1at 4031.170 kb on + strand, within Xcc-8004.4199.1at 4031.170 kb on + strand, within Xcc-8004.4199.1at 4031.170 kb on + strand, within Xcc-8004.4199.1at 4031.170 kb on + strand, within Xcc-8004.4199.1at 4031.170 kb on + strand, within Xcc-8004.4199.1at 4031.170 kb on + strand, within Xcc-8004.4199.1at 4031.171 kb on - strand, within Xcc-8004.4199.1at 4031.171 kb on - strand, within Xcc-8004.4199.1at 4031.236 kb on + strand, within Xcc-8004.4199.1at 4031.236 kb on + strand, within Xcc-8004.4199.1at 4031.236 kb on + strand, within Xcc-8004.4199.1at 4031.236 kb on + strand, within Xcc-8004.4199.1at 4031.237 kb on - strand, within Xcc-8004.4199.1at 4031.417 kb on - strand, within Xcc-8004.4199.1at 4031.426 kb on + strand, within Xcc-8004.4199.1at 4031.426 kb on + strand, within Xcc-8004.4199.1at 4031.426 kb on + strand, within Xcc-8004.4199.1at 4031.427 kb on - strand, within Xcc-8004.4199.1at 4031.427 kb on - strand, within Xcc-8004.4199.1at 4031.449 kb on + strand, within Xcc-8004.4199.1at 4031.450 kb on - strand, within Xcc-8004.4199.1at 4031.450 kb on - strand, within Xcc-8004.4199.1at 4031.491 kb on + strand, within Xcc-8004.4199.1at 4031.668 kb on + strandat 4031.669 kb on - strandat 4031.669 kb on - strandat 4032.270 kb on - strand, within Xcc-8004.4200.1at 4032.270 kb on - strand, within Xcc-8004.4200.1at 4032.270 kb on - strand, within Xcc-8004.4200.1at 4032.270 kb on - strand, within Xcc-8004.4200.1at 4032.270 kb on - strand, within Xcc-8004.4200.1at 4032.319 kb on + strandat 4032.419 kb on + strandat 4032.419 kb on + strandat 4032.419 kb on + strandat 4032.419 kb on + strandat 4032.419 kb on + strandat 4032.419 kb on + strandat 4032.420 kb on - strandat 4032.420 kb on - strandat 4032.420 kb on - strandat 4032.420 kb on - strandat 4032.420 kb on - strandat 4032.420 kb on - strandat 4032.420 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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4,029,597 + Xcc-8004.4197.1 0.62 -1.1
4,029,597 + Xcc-8004.4197.1 0.62 +0.5
4,029,676 - Xcc-8004.4197.1 0.67 +0.3
4,029,676 - Xcc-8004.4197.1 0.67 -0.7
4,029,725 - Xcc-8004.4197.1 0.70 -1.9
4,029,725 - Xcc-8004.4197.1 0.70 -0.8
4,029,956 + Xcc-8004.4197.1 0.83 -0.1
4,029,957 - Xcc-8004.4197.1 0.83 +1.8
4,030,098 + -1.3
4,030,098 + +0.4
4,030,098 + -2.5
4,030,099 - -0.2
4,030,099 - -1.4
4,030,099 - -0.1
4,030,099 - +0.1
4,030,099 - -0.9
4,030,149 + +0.7
4,030,149 + +1.1
4,030,149 + +1.0
4,030,149 + -1.3
4,030,149 + +0.3
4,030,149 + +1.0
4,030,150 - -1.7
4,030,150 - +0.1
4,030,150 - +0.8
4,030,150 - +0.3
4,030,150 - +1.4
4,030,228 + -0.3
4,030,228 + -1.4
4,030,228 + +0.5
4,030,228 + +0.4
4,030,228 + +0.2
4,030,228 + -1.0
4,030,228 + -2.6
4,030,229 - -0.7
4,030,229 - -1.1
4,030,229 - -0.9
4,030,229 - +0.2
4,030,270 + -2.4
4,030,315 + Xcc-8004.4198.1 0.17 +0.6
4,030,315 + Xcc-8004.4198.1 0.17 +0.0
4,030,315 + Xcc-8004.4198.1 0.17 +0.1
4,030,315 + Xcc-8004.4198.1 0.17 -1.4
4,030,315 + Xcc-8004.4198.1 0.17 -0.3
4,030,315 + Xcc-8004.4198.1 0.17 -0.9
4,030,315 + Xcc-8004.4198.1 0.17 +0.1
4,030,315 + Xcc-8004.4198.1 0.17 +0.3
4,030,315 + Xcc-8004.4198.1 0.17 -0.6
4,030,315 + Xcc-8004.4198.1 0.17 +0.9
4,030,315 + Xcc-8004.4198.1 0.17 +0.5
4,030,315 + Xcc-8004.4198.1 0.17 -1.5
4,030,315 + Xcc-8004.4198.1 0.17 +0.3
4,030,315 + Xcc-8004.4198.1 0.17 +0.7
4,030,316 - Xcc-8004.4198.1 0.18 -0.3
4,030,316 - Xcc-8004.4198.1 0.18 -0.3
4,030,316 - Xcc-8004.4198.1 0.18 +0.3
4,030,316 - Xcc-8004.4198.1 0.18 +2.2
4,030,316 - Xcc-8004.4198.1 0.18 -2.3
4,030,316 - Xcc-8004.4198.1 0.18 -2.8
4,030,370 + Xcc-8004.4198.1 0.59 -0.4
4,030,371 - Xcc-8004.4198.1 0.60 +2.1
4,030,397 - Xcc-8004.4198.1 0.80 -0.7
4,030,421 + -0.1
4,030,422 - -0.4
4,030,422 - -1.9
4,030,422 - +0.0
4,030,425 + -0.4
4,030,444 + -0.1
4,030,445 - +0.3
4,030,570 + -1.8
4,030,570 + +0.8
4,030,570 + +0.2
4,030,570 + +0.8
4,030,570 + +0.6
4,030,571 - -0.5
4,030,571 - +0.0
4,030,571 - +1.2
4,030,571 - +1.5
4,030,919 - Xcc-8004.4199.1 0.32 -1.4
4,030,957 + Xcc-8004.4199.1 0.36 +0.4
4,030,957 + Xcc-8004.4199.1 0.36 -0.9
4,030,957 + Xcc-8004.4199.1 0.36 -0.3
4,030,957 + Xcc-8004.4199.1 0.36 -1.2
4,030,957 + Xcc-8004.4199.1 0.36 -0.3
4,030,957 + Xcc-8004.4199.1 0.36 +1.7
4,030,957 + Xcc-8004.4199.1 0.36 -1.4
4,030,958 - Xcc-8004.4199.1 0.36 -1.9
4,030,958 - Xcc-8004.4199.1 0.36 -1.2
4,030,958 - Xcc-8004.4199.1 0.36 -0.9
4,030,958 - Xcc-8004.4199.1 0.36 -0.9
4,030,958 - Xcc-8004.4199.1 0.36 +0.0
4,030,958 - Xcc-8004.4199.1 0.36 +0.1
4,031,008 + Xcc-8004.4199.1 0.40 -0.6
4,031,009 - Xcc-8004.4199.1 0.41 -0.6
4,031,041 + Xcc-8004.4199.1 0.43 -1.5
4,031,041 + Xcc-8004.4199.1 0.43 +2.1
4,031,042 - Xcc-8004.4199.1 0.44 +0.2
4,031,092 + Xcc-8004.4199.1 0.48 -1.0
4,031,092 + Xcc-8004.4199.1 0.48 -0.1
4,031,093 - Xcc-8004.4199.1 0.48 +0.0
4,031,140 + Xcc-8004.4199.1 0.53 +0.6
4,031,140 + Xcc-8004.4199.1 0.53 -1.9
4,031,140 + Xcc-8004.4199.1 0.53 +1.3
4,031,140 + Xcc-8004.4199.1 0.53 -1.2
4,031,140 + Xcc-8004.4199.1 0.53 +0.7
4,031,141 - Xcc-8004.4199.1 0.53 +0.8
4,031,141 - Xcc-8004.4199.1 0.53 -0.7
4,031,167 + Xcc-8004.4199.1 0.55 -1.5
4,031,167 + Xcc-8004.4199.1 0.55 -2.7
4,031,167 + Xcc-8004.4199.1 0.55 -0.9
4,031,167 + Xcc-8004.4199.1 0.55 -0.2
4,031,167 + Xcc-8004.4199.1 0.55 -1.9
4,031,167 + Xcc-8004.4199.1 0.55 -0.3
4,031,167 + Xcc-8004.4199.1 0.55 +0.6
4,031,167 + Xcc-8004.4199.1 0.55 +1.3
4,031,167 + Xcc-8004.4199.1 0.55 -1.4
4,031,167 + Xcc-8004.4199.1 0.55 -1.5
4,031,167 + Xcc-8004.4199.1 0.55 -1.7
4,031,167 + Xcc-8004.4199.1 0.55 +0.1
4,031,168 - Xcc-8004.4199.1 0.55 +0.3
4,031,168 - Xcc-8004.4199.1 0.55 +0.6
4,031,168 - Xcc-8004.4199.1 0.55 -0.6
4,031,168 - Xcc-8004.4199.1 0.55 -1.3
4,031,168 - Xcc-8004.4199.1 0.55 -1.3
4,031,170 + Xcc-8004.4199.1 0.55 +0.7
4,031,170 + Xcc-8004.4199.1 0.55 -1.3
4,031,170 + Xcc-8004.4199.1 0.55 +1.1
4,031,170 + Xcc-8004.4199.1 0.55 -1.1
4,031,170 + Xcc-8004.4199.1 0.55 +1.6
4,031,170 + Xcc-8004.4199.1 0.55 -0.3
4,031,170 + Xcc-8004.4199.1 0.55 +0.7
4,031,170 + Xcc-8004.4199.1 0.55 +0.6
4,031,171 - Xcc-8004.4199.1 0.55 -1.4
4,031,171 - Xcc-8004.4199.1 0.55 +1.1
4,031,236 + Xcc-8004.4199.1 0.61 -2.0
4,031,236 + Xcc-8004.4199.1 0.61 -1.6
4,031,236 + Xcc-8004.4199.1 0.61 +0.7
4,031,236 + Xcc-8004.4199.1 0.61 +0.3
4,031,237 - Xcc-8004.4199.1 0.62 +0.3
4,031,417 - Xcc-8004.4199.1 0.78 +3.1
4,031,426 + Xcc-8004.4199.1 0.79 -1.2
4,031,426 + Xcc-8004.4199.1 0.79 -1.0
4,031,426 + Xcc-8004.4199.1 0.79 -0.7
4,031,427 - Xcc-8004.4199.1 0.79 -1.8
4,031,427 - Xcc-8004.4199.1 0.79 -0.8
4,031,449 + Xcc-8004.4199.1 0.81 +0.5
4,031,450 - Xcc-8004.4199.1 0.81 -1.3
4,031,450 - Xcc-8004.4199.1 0.81 +0.4
4,031,491 + Xcc-8004.4199.1 0.85 -2.3
4,031,668 + -1.9
4,031,669 - -0.4
4,031,669 - -0.3
4,032,270 - Xcc-8004.4200.1 0.83 -0.3
4,032,270 - Xcc-8004.4200.1 0.83 -1.7
4,032,270 - Xcc-8004.4200.1 0.83 -1.1
4,032,270 - Xcc-8004.4200.1 0.83 +0.4
4,032,270 - Xcc-8004.4200.1 0.83 -2.2
4,032,319 + +2.1
4,032,419 + +0.9
4,032,419 + -1.2
4,032,419 + +1.5
4,032,419 + +0.6
4,032,419 + +2.2
4,032,419 + -1.0
4,032,420 - -1.6
4,032,420 - +0.4
4,032,420 - +3.4
4,032,420 - +0.8
4,032,420 - +0.3
4,032,420 - -1.6
4,032,420 - +0.1

Or see this region's nucleotide sequence