Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3543.1 and Xcc-8004.3544.1 overlap by 4 nucleotides Xcc-8004.3544.1 and Xcc-8004.3545.1 are separated by 84 nucleotides Xcc-8004.3545.1 and Xcc-8004.3546.1 are separated by 8 nucleotides
Xcc-8004.3543.1: Xcc-8004.3543.1 - [Protein-PII] uridylyltransferase (EC 2.7.7.59), at 3,434,074 to 3,436,683
Xcc-8004.3543.1
Xcc-8004.3544.1: Xcc-8004.3544.1 - Methionine aminopeptidase (EC 3.4.11.18), at 3,436,680 to 3,437,603
Xcc-8004.3544.1
Xcc-8004.3545.1: Xcc-8004.3545.1 - Sigma-fimbriae tip adhesin, at 3,437,688 to 3,438,278
Xcc-8004.3545.1
Xcc-8004.3546.1: Xcc-8004.3546.1 - Sigma-fimbriae chaperone protein, at 3,438,287 to 3,439,030
Xcc-8004.3546.1
Position (kb) 3436
3437
3438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 3437.652 kb on + strand at 3437.652 kb on + strand at 3437.653 kb on - strand at 3437.653 kb on - strand at 3437.653 kb on - strand at 3437.671 kb on + strand at 3437.672 kb on - strand at 3437.672 kb on - strand at 3437.694 kb on + strand at 3437.694 kb on + strand at 3437.694 kb on + strand at 3437.694 kb on + strand at 3437.694 kb on + strand at 3437.694 kb on + strand at 3437.695 kb on - strand at 3437.695 kb on - strand at 3437.695 kb on - strand at 3437.695 kb on - strand at 3437.695 kb on - strand at 3437.695 kb on - strand at 3437.695 kb on - strand at 3437.695 kb on - strand at 3437.695 kb on - strand at 3437.695 kb on - strand at 3437.733 kb on + strand at 3437.733 kb on + strand at 3437.733 kb on + strand at 3437.733 kb on + strand at 3437.733 kb on + strand at 3437.733 kb on + strand at 3437.734 kb on - strand at 3437.734 kb on - strand at 3437.759 kb on + strand, within Xcc-8004.3545.1 at 3437.759 kb on + strand, within Xcc-8004.3545.1 at 3437.759 kb on + strand, within Xcc-8004.3545.1 at 3437.759 kb on + strand, within Xcc-8004.3545.1 at 3437.759 kb on + strand, within Xcc-8004.3545.1 at 3437.760 kb on - strand, within Xcc-8004.3545.1 at 3437.760 kb on - strand, within Xcc-8004.3545.1 at 3437.760 kb on - strand, within Xcc-8004.3545.1 at 3437.760 kb on - strand, within Xcc-8004.3545.1 at 3437.760 kb on - strand, within Xcc-8004.3545.1 at 3437.776 kb on + strand, within Xcc-8004.3545.1 at 3437.776 kb on + strand, within Xcc-8004.3545.1 at 3437.776 kb on + strand, within Xcc-8004.3545.1 at 3437.776 kb on + strand, within Xcc-8004.3545.1 at 3437.776 kb on + strand, within Xcc-8004.3545.1 at 3437.777 kb on - strand, within Xcc-8004.3545.1 at 3437.777 kb on - strand, within Xcc-8004.3545.1 at 3437.777 kb on - strand, within Xcc-8004.3545.1 at 3437.777 kb on - strand, within Xcc-8004.3545.1 at 3437.777 kb on - strand, within Xcc-8004.3545.1 at 3437.777 kb on - strand, within Xcc-8004.3545.1 at 3437.777 kb on - strand, within Xcc-8004.3545.1 at 3437.914 kb on + strand, within Xcc-8004.3545.1 at 3437.915 kb on - strand, within Xcc-8004.3545.1 at 3437.982 kb on + strand, within Xcc-8004.3545.1 at 3437.982 kb on + strand, within Xcc-8004.3545.1 at 3437.982 kb on + strand, within Xcc-8004.3545.1 at 3437.982 kb on + strand, within Xcc-8004.3545.1 at 3437.983 kb on - strand, within Xcc-8004.3545.1 at 3437.983 kb on - strand, within Xcc-8004.3545.1 at 3437.983 kb on - strand, within Xcc-8004.3545.1 at 3437.983 kb on - strand, within Xcc-8004.3545.1 at 3437.983 kb on - strand, within Xcc-8004.3545.1 at 3437.983 kb on - strand, within Xcc-8004.3545.1 at 3437.983 kb on - strand, within Xcc-8004.3545.1 at 3437.983 kb on - strand, within Xcc-8004.3545.1 at 3437.983 kb on - strand, within Xcc-8004.3545.1 at 3438.091 kb on - strand, within Xcc-8004.3545.1 at 3438.091 kb on - strand, within Xcc-8004.3545.1 at 3438.091 kb on - strand, within Xcc-8004.3545.1 at 3438.099 kb on + strand, within Xcc-8004.3545.1 at 3438.100 kb on - strand, within Xcc-8004.3545.1 at 3438.100 kb on - strand, within Xcc-8004.3545.1 at 3438.100 kb on - strand, within Xcc-8004.3545.1 at 3438.149 kb on + strand, within Xcc-8004.3545.1 at 3438.149 kb on + strand, within Xcc-8004.3545.1 at 3438.149 kb on + strand, within Xcc-8004.3545.1 at 3438.149 kb on + strand, within Xcc-8004.3545.1 at 3438.150 kb on - strand, within Xcc-8004.3545.1 at 3438.150 kb on - strand, within Xcc-8004.3545.1 at 3438.150 kb on - strand, within Xcc-8004.3545.1 at 3438.150 kb on - strand, within Xcc-8004.3545.1 at 3438.150 kb on - strand, within Xcc-8004.3545.1 at 3438.150 kb on - strand, within Xcc-8004.3545.1 at 3438.186 kb on + strand, within Xcc-8004.3545.1 at 3438.187 kb on - strand, within Xcc-8004.3545.1 at 3438.195 kb on + strand, within Xcc-8004.3545.1 at 3438.195 kb on + strand, within Xcc-8004.3545.1 at 3438.195 kb on + strand, within Xcc-8004.3545.1 at 3438.196 kb on - strand, within Xcc-8004.3545.1 at 3438.196 kb on - strand, within Xcc-8004.3545.1 at 3438.239 kb on + strand at 3438.239 kb on + strand at 3438.240 kb on - strand at 3438.240 kb on - strand at 3438.240 kb on - strand at 3438.240 kb on - strand at 3438.243 kb on + strand at 3438.243 kb on + strand at 3438.243 kb on + strand at 3438.244 kb on - strand at 3438.244 kb on - strand at 3438.244 kb on - strand at 3438.244 kb on - strand at 3438.244 kb on - strand at 3438.244 kb on - strand at 3438.244 kb on - strand at 3438.244 kb on - strand at 3438.244 kb on - strand at 3438.273 kb on + strand at 3438.273 kb on + strand at 3438.273 kb on + strand at 3438.273 kb on + strand at 3438.273 kb on + strand at 3438.273 kb on + strand at 3438.273 kb on + strand at 3438.273 kb on + strand at 3438.274 kb on - strand at 3438.274 kb on - strand at 3438.274 kb on - strand at 3438.274 kb on - strand at 3438.274 kb on - strand at 3438.274 kb on - strand at 3438.274 kb on - strand at 3438.274 kb on - strand at 3438.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,437,652 + +1.3 3,437,652 + -1.3 3,437,653 - +0.1 3,437,653 - -0.1 3,437,653 - -1.2 3,437,671 + +0.8 3,437,672 - -0.8 3,437,672 - -0.2 3,437,694 + -1.4 3,437,694 + +0.5 3,437,694 + +0.2 3,437,694 + -0.5 3,437,694 + -1.8 3,437,694 + -0.6 3,437,695 - +0.7 3,437,695 - +0.2 3,437,695 - -0.8 3,437,695 - +1.4 3,437,695 - -0.9 3,437,695 - +0.7 3,437,695 - -1.5 3,437,695 - -0.9 3,437,695 - -1.1 3,437,695 - +1.1 3,437,733 + +0.7 3,437,733 + +2.1 3,437,733 + -0.6 3,437,733 + -1.5 3,437,733 + +0.0 3,437,733 + -0.2 3,437,734 - +0.5 3,437,734 - -3.3 3,437,759 + Xcc-8004.3545.1 0.12 -1.4 3,437,759 + Xcc-8004.3545.1 0.12 -0.5 3,437,759 + Xcc-8004.3545.1 0.12 -1.4 3,437,759 + Xcc-8004.3545.1 0.12 -0.8 3,437,759 + Xcc-8004.3545.1 0.12 -0.1 3,437,760 - Xcc-8004.3545.1 0.12 +1.2 3,437,760 - Xcc-8004.3545.1 0.12 +0.6 3,437,760 - Xcc-8004.3545.1 0.12 +0.7 3,437,760 - Xcc-8004.3545.1 0.12 -1.0 3,437,760 - Xcc-8004.3545.1 0.12 -0.2 3,437,776 + Xcc-8004.3545.1 0.15 +0.9 3,437,776 + Xcc-8004.3545.1 0.15 -0.6 3,437,776 + Xcc-8004.3545.1 0.15 +0.7 3,437,776 + Xcc-8004.3545.1 0.15 +0.6 3,437,776 + Xcc-8004.3545.1 0.15 -0.9 3,437,777 - Xcc-8004.3545.1 0.15 +1.3 3,437,777 - Xcc-8004.3545.1 0.15 +1.9 3,437,777 - Xcc-8004.3545.1 0.15 +0.2 3,437,777 - Xcc-8004.3545.1 0.15 -1.1 3,437,777 - Xcc-8004.3545.1 0.15 +1.6 3,437,777 - Xcc-8004.3545.1 0.15 -0.3 3,437,777 - Xcc-8004.3545.1 0.15 +0.1 3,437,914 + Xcc-8004.3545.1 0.38 -2.9 3,437,915 - Xcc-8004.3545.1 0.38 +1.1 3,437,982 + Xcc-8004.3545.1 0.50 -0.1 3,437,982 + Xcc-8004.3545.1 0.50 -0.7 3,437,982 + Xcc-8004.3545.1 0.50 +0.3 3,437,982 + Xcc-8004.3545.1 0.50 -0.8 3,437,983 - Xcc-8004.3545.1 0.50 -1.1 3,437,983 - Xcc-8004.3545.1 0.50 -0.8 3,437,983 - Xcc-8004.3545.1 0.50 -1.8 3,437,983 - Xcc-8004.3545.1 0.50 -2.8 3,437,983 - Xcc-8004.3545.1 0.50 +0.5 3,437,983 - Xcc-8004.3545.1 0.50 -0.6 3,437,983 - Xcc-8004.3545.1 0.50 +1.1 3,437,983 - Xcc-8004.3545.1 0.50 +0.5 3,437,983 - Xcc-8004.3545.1 0.50 -0.9 3,438,091 - Xcc-8004.3545.1 0.68 -0.4 3,438,091 - Xcc-8004.3545.1 0.68 -2.9 3,438,091 - Xcc-8004.3545.1 0.68 -1.2 3,438,099 + Xcc-8004.3545.1 0.70 +0.0 3,438,100 - Xcc-8004.3545.1 0.70 +0.1 3,438,100 - Xcc-8004.3545.1 0.70 +6.0 3,438,100 - Xcc-8004.3545.1 0.70 -1.4 3,438,149 + Xcc-8004.3545.1 0.78 -0.1 3,438,149 + Xcc-8004.3545.1 0.78 -0.1 3,438,149 + Xcc-8004.3545.1 0.78 -3.2 3,438,149 + Xcc-8004.3545.1 0.78 -1.6 3,438,150 - Xcc-8004.3545.1 0.78 -0.9 3,438,150 - Xcc-8004.3545.1 0.78 +1.0 3,438,150 - Xcc-8004.3545.1 0.78 -0.8 3,438,150 - Xcc-8004.3545.1 0.78 -1.4 3,438,150 - Xcc-8004.3545.1 0.78 +0.6 3,438,150 - Xcc-8004.3545.1 0.78 -1.5 3,438,186 + Xcc-8004.3545.1 0.84 +0.4 3,438,187 - Xcc-8004.3545.1 0.84 -1.1 3,438,195 + Xcc-8004.3545.1 0.86 -0.1 3,438,195 + Xcc-8004.3545.1 0.86 -1.0 3,438,195 + Xcc-8004.3545.1 0.86 +0.7 3,438,196 - Xcc-8004.3545.1 0.86 -0.1 3,438,196 - Xcc-8004.3545.1 0.86 -0.3 3,438,239 + +0.3 3,438,239 + +0.5 3,438,240 - +1.1 3,438,240 - -0.9 3,438,240 - -1.6 3,438,240 - -1.6 3,438,243 + +0.5 3,438,243 + +1.7 3,438,243 + -1.0 3,438,244 - +2.4 3,438,244 - -0.3 3,438,244 - -0.3 3,438,244 - -0.8 3,438,244 - +0.7 3,438,244 - +0.8 3,438,244 - +0.1 3,438,244 - -0.8 3,438,244 - -1.4 3,438,273 + +2.4 3,438,273 + -1.0 3,438,273 + +0.5 3,438,273 + +0.0 3,438,273 + -1.1 3,438,273 + +1.6 3,438,273 + -1.2 3,438,273 + +0.0 3,438,274 - +0.0 3,438,274 - -2.1 3,438,274 - +0.4 3,438,274 - -1.0 3,438,274 - -1.7 3,438,274 - -0.0 3,438,274 - +1.7 3,438,274 - -0.7 3,438,274 - -1.5
Or see this region's nucleotide sequence