Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3438.1 and Xcc-8004.3442.1 are separated by 763 nucleotides Xcc-8004.3442.1 and Xcc-8004.3443.1 overlap by 4 nucleotides Xcc-8004.3443.1 and Xcc-8004.3445.1 overlap by 92 nucleotides
Xcc-8004.3438.1: Xcc-8004.3438.1 - Serine peptidase, at 3,328,367 to 3,330,826
Xcc-8004.3438.1
Xcc-8004.3442.1: Xcc-8004.3442.1 - putative; ORF located using Glimmer/Genemark, at 3,331,590 to 3,331,829
Xcc-8004.3442.1
Xcc-8004.3443.1: Xcc-8004.3443.1 - hypothetical protein, at 3,331,826 to 3,332,650
Xcc-8004.3443.1
Xcc-8004.3445.1: Xcc-8004.3445.1 - hypothetical protein, at 3,332,559 to 3,332,936
Xcc-8004.3445.1
Position (kb) 3331
3332 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.831 kb on + strand at 3330.832 kb on - strand at 3330.832 kb on - strand at 3330.850 kb on + strand at 3330.850 kb on + strand at 3330.850 kb on + strand at 3330.850 kb on + strand at 3330.851 kb on - strand at 3330.851 kb on - strand at 3330.880 kb on + strand at 3330.880 kb on + strand at 3330.880 kb on + strand at 3330.881 kb on - strand at 3330.891 kb on + strand at 3330.891 kb on + strand at 3330.891 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.925 kb on + strand at 3331.372 kb on + strand at 3331.408 kb on + strand at 3331.409 kb on - strand at 3331.415 kb on + strand at 3331.415 kb on + strand at 3331.415 kb on + strand at 3331.416 kb on - strand at 3331.416 kb on - strand at 3331.416 kb on - strand at 3331.416 kb on - strand at 3331.427 kb on + strand at 3331.427 kb on + strand at 3331.427 kb on + strand at 3331.427 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.448 kb on - strand at 3331.448 kb on - strand at 3331.448 kb on - strand at 3331.448 kb on - strand at 3331.448 kb on - strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.535 kb on + strand at 3331.536 kb on - strand at 3331.681 kb on + strand, within Xcc-8004.3442.1 at 3331.681 kb on + strand, within Xcc-8004.3442.1 at 3331.682 kb on - strand, within Xcc-8004.3442.1 at 3331.794 kb on + strand, within Xcc-8004.3442.1 at 3331.829 kb on + strand at 3331.830 kb on - strand at 3331.830 kb on - strand at 3332.084 kb on + strand, within Xcc-8004.3443.1 at 3332.085 kb on - strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.136 kb on + strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.137 kb on - strand, within Xcc-8004.3443.1 at 3332.498 kb on + strand, within Xcc-8004.3443.1 at 3332.498 kb on + strand, within Xcc-8004.3443.1 at 3332.498 kb on + strand, within Xcc-8004.3443.1 at 3332.498 kb on + strand, within Xcc-8004.3443.1 at 3332.499 kb on - strand, within Xcc-8004.3443.1 at 3332.499 kb on - strand, within Xcc-8004.3443.1 at 3332.499 kb on - strand, within Xcc-8004.3443.1 at 3332.556 kb on + strand, within Xcc-8004.3443.1 at 3332.556 kb on + strand, within Xcc-8004.3443.1 at 3332.557 kb on - strand, within Xcc-8004.3443.1 at 3332.703 kb on + strand, within Xcc-8004.3445.1 at 3332.703 kb on + strand, within Xcc-8004.3445.1 at 3332.727 kb on + strand, within Xcc-8004.3445.1 at 3332.780 kb on - strand, within Xcc-8004.3445.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,330,648 + +0.8 3,330,648 + -2.8 3,330,648 + -1.7 3,330,648 + +0.0 3,330,648 + -0.5 3,330,648 + -0.5 3,330,648 + -1.5 3,330,648 + +1.1 3,330,648 + +0.2 3,330,648 + -2.6 3,330,648 + -2.4 3,330,648 + +0.1 3,330,648 + -1.7 3,330,648 + +0.4 3,330,648 + -1.5 3,330,648 + +0.2 3,330,648 + -1.9 3,330,649 - -1.0 3,330,649 - +1.1 3,330,649 - -2.0 3,330,649 - -1.3 3,330,649 - +0.3 3,330,649 - +0.2 3,330,649 - -2.1 3,330,649 - -0.3 3,330,649 - -2.7 3,330,649 - -1.3 3,330,649 - -1.2 3,330,649 - +0.6 3,330,649 - +0.9 3,330,649 - -2.6 3,330,649 - -0.4 3,330,649 - -1.7 3,330,649 - -2.4 3,330,649 - -1.4 3,330,649 - -2.9 3,330,649 - -1.2 3,330,831 + -1.1 3,330,832 - +1.4 3,330,832 - -1.9 3,330,850 + -0.2 3,330,850 + +0.2 3,330,850 + +1.2 3,330,850 + -0.4 3,330,851 - +2.3 3,330,851 - +1.3 3,330,880 + -0.7 3,330,880 + +0.3 3,330,880 + -0.2 3,330,881 - -0.7 3,330,891 + +0.9 3,330,891 + +0.9 3,330,891 + -1.5 3,330,899 + -1.7 3,330,899 + -1.2 3,330,899 + -1.1 3,330,899 + +1.1 3,330,899 + -1.7 3,330,899 + -0.4 3,330,925 + +0.7 3,331,372 + -1.1 3,331,408 + +0.1 3,331,409 - -1.5 3,331,415 + -0.7 3,331,415 + +1.5 3,331,415 + +0.7 3,331,416 - +0.4 3,331,416 - -0.6 3,331,416 - +1.7 3,331,416 - -0.0 3,331,427 + +0.7 3,331,427 + -2.6 3,331,427 + -0.5 3,331,427 + +0.3 3,331,447 + -0.3 3,331,447 + +1.2 3,331,447 + +0.2 3,331,447 + -0.3 3,331,447 + -1.8 3,331,447 + -0.5 3,331,447 + +0.9 3,331,447 + -0.9 3,331,448 - -2.1 3,331,448 - +0.2 3,331,448 - -0.1 3,331,448 - +1.1 3,331,448 - -1.1 3,331,515 + -1.2 3,331,515 + -1.5 3,331,515 + -0.3 3,331,515 + +0.4 3,331,515 + +0.9 3,331,515 + -0.2 3,331,516 - +1.4 3,331,516 - -0.6 3,331,516 - +2.3 3,331,516 - +1.3 3,331,516 - -1.7 3,331,516 - -0.6 3,331,516 - +0.1 3,331,535 + -0.1 3,331,536 - +1.1 3,331,681 + Xcc-8004.3442.1 0.38 -2.6 3,331,681 + Xcc-8004.3442.1 0.38 +3.7 3,331,682 - Xcc-8004.3442.1 0.38 +0.7 3,331,794 + Xcc-8004.3442.1 0.85 +0.2 3,331,829 + -2.4 3,331,830 - +0.5 3,331,830 - -0.7 3,332,084 + Xcc-8004.3443.1 0.31 -1.1 3,332,085 - Xcc-8004.3443.1 0.31 -0.4 3,332,136 + Xcc-8004.3443.1 0.38 -1.2 3,332,136 + Xcc-8004.3443.1 0.38 -2.3 3,332,136 + Xcc-8004.3443.1 0.38 +1.3 3,332,136 + Xcc-8004.3443.1 0.38 -0.1 3,332,136 + Xcc-8004.3443.1 0.38 +0.4 3,332,136 + Xcc-8004.3443.1 0.38 -2.7 3,332,136 + Xcc-8004.3443.1 0.38 -0.2 3,332,136 + Xcc-8004.3443.1 0.38 +0.1 3,332,136 + Xcc-8004.3443.1 0.38 -2.0 3,332,136 + Xcc-8004.3443.1 0.38 +0.1 3,332,136 + Xcc-8004.3443.1 0.38 +0.6 3,332,136 + Xcc-8004.3443.1 0.38 -0.9 3,332,136 + Xcc-8004.3443.1 0.38 -0.6 3,332,136 + Xcc-8004.3443.1 0.38 -0.1 3,332,136 + Xcc-8004.3443.1 0.38 +1.3 3,332,136 + Xcc-8004.3443.1 0.38 -1.5 3,332,136 + Xcc-8004.3443.1 0.38 +1.4 3,332,137 - Xcc-8004.3443.1 0.38 -0.5 3,332,137 - Xcc-8004.3443.1 0.38 +0.6 3,332,137 - Xcc-8004.3443.1 0.38 -0.7 3,332,137 - Xcc-8004.3443.1 0.38 +0.9 3,332,137 - Xcc-8004.3443.1 0.38 -0.5 3,332,137 - Xcc-8004.3443.1 0.38 +0.0 3,332,137 - Xcc-8004.3443.1 0.38 -0.8 3,332,137 - Xcc-8004.3443.1 0.38 -1.0 3,332,137 - Xcc-8004.3443.1 0.38 +2.4 3,332,137 - Xcc-8004.3443.1 0.38 +0.4 3,332,137 - Xcc-8004.3443.1 0.38 +1.6 3,332,137 - Xcc-8004.3443.1 0.38 +1.2 3,332,137 - Xcc-8004.3443.1 0.38 -0.9 3,332,137 - Xcc-8004.3443.1 0.38 +0.7 3,332,137 - Xcc-8004.3443.1 0.38 +0.1 3,332,137 - Xcc-8004.3443.1 0.38 +0.1 3,332,137 - Xcc-8004.3443.1 0.38 -0.6 3,332,137 - Xcc-8004.3443.1 0.38 +0.9 3,332,498 + Xcc-8004.3443.1 0.81 +0.0 3,332,498 + Xcc-8004.3443.1 0.81 +1.7 3,332,498 + Xcc-8004.3443.1 0.81 +0.9 3,332,498 + Xcc-8004.3443.1 0.81 +2.3 3,332,499 - Xcc-8004.3443.1 0.82 +0.5 3,332,499 - Xcc-8004.3443.1 0.82 -1.6 3,332,499 - Xcc-8004.3443.1 0.82 -1.2 3,332,556 + Xcc-8004.3443.1 0.88 -1.1 3,332,556 + Xcc-8004.3443.1 0.88 +2.2 3,332,557 - Xcc-8004.3443.1 0.89 -1.9 3,332,703 + Xcc-8004.3445.1 0.38 +0.6 3,332,703 + Xcc-8004.3445.1 0.38 +0.0 3,332,727 + Xcc-8004.3445.1 0.44 -0.7 3,332,780 - Xcc-8004.3445.1 0.58 -1.2
Or see this region's nucleotide sequence